Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00054 ATGGCGCCTTCACGGGTTGCTGGAGGGTTGGCACAATCTTCTTCCAGTTCAGGGATTTTCTTCCAAGCAGATGGGCACTCCCAGGCCGTTATTAATTCTCACTTGAGCTCATCTTTTGTTAACTCATCTACTTCAGTTCCTGGAACTGCAAGATCAAATTTGGTTCCAGTTTCAGGGGATATGAATAATACAGTTTTAAATAGTGTGGCGAACTCTGGTCCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAACTCAGCATTTTCAGGTGGGGCCCATCTTCAGAGAAGTGCTAGCATCAATAATGAGTCGTATATGCGGTTGCCCGCATCGCCTTTGTCATTCTCTTCTAATAATCTTAGTATTTCCGGATCATCAGTTATGGATGGCTCTTCTGTGGTGCAACAAAATTCACAACAAGACCATAATTCCCAACAAATTCAACAGAACCAACTGCAGTCGCAGCAAGGTGCATCAAGTGCAACATCATTGCCAACATCACAAACCGGCCAAGTTTCACTTCCTCTTGGTGCACGACTCTCTGGGTCTTTTGTTCCAGATACTGGTAATTTTTCTCAGGTTCAGAAGAAACCACGGTTGGACGCAAAGCAGGAAGATATTCTGCCACAGCAGGTATTGCAGCAGCTATTTCAGAGGCAAGACTCCTTGCAGTTACAAGGACGCAATCCTCAATTGCAAGCTCTGTTACAACAACAAAGATTACGCCAACAACAGCAGATTTTGCAGTCTATGCCACAGTTGCAGAGAGCTCAGTTACAGCAGCAGCAGCAAATGCAGTTGAGGCAGCAGTTGCAACAGCAGGCAATGCAGCCTAGTTCTCCAATGAAACGATCATATGATGGTGGTATATGCTCTCGTCGGCTGATGCAGTATTTATATCACCAACGACAAAGGCCTCCTGACAATAGCATTGCCTATTGGAGAAAGTTTGTAACAGAGTATTACTCGCCACGCGCAAAGAAACGATGGTGCTTATCATTGTATGATAATGTTGGCCATCATGCACTTGGTGTTTTTCCTCAGGCAGCTGTGGACGCATGGCAATGTGACATCTGTGGATCTAAATCCGGAAGAGGATTTGAAGCTACTTATGAAGTACTTCCTAGACTAAATGAGATCAAATTTGGCAGTGGAGTCATCGATGAGCTTCTGTTTTTGGATTTGCCCCGTGAATGTAGATTTAATTCCGGAATTATGATGTTGGAGTACGGAAGAGCTGTTCAAGAGAGTGTTTATGAGCAACTTCGCGTTGTCCGTGAGGGCCAGCTTCGTATCATATTCACTAATGAATTAAAGATATTATCATGGGAGTTTTGTGCTCGGCGCCATGAGGAACTCCTTCCTCGTAGGTTGGTTGCGCCACAGGTGAATCAGTTAGTCCAGGTAGCTCAAAAATGCCAGAGTACAATTTCTGAAGGCAGATCAGATGGGGTGTCACAGAAAGATTTACAAGCTAACAGCAATATGGTGCTGACAGCCGGCCGTCAACTGGCAAAGAGTTTGGAGTTGCAGTCACTTAACGACTTGGGTTTCTCTAAAAGATATGTGAGGTGTTTGCAGATATCAGAAGTTGTCAATAGCATGAAAGATCTTGTCGATTTCTCCCGTGAGCACAAAATTGGGCCTATTGAGGGGTTGAAAAATTATCCTCGCCATGCTGCCGCAGCCAAACTACAGATTAAAAAAATGCAGGAGATGGAGCAGTTAGCAAGTGTTCAGGGTCTGCCCACCGACCGCAATACTCTTAATAAGTTAATGGCAATGCATCCAAGTCTCAACAACCAAGTTAATAGCAACCATCAAATGGTCGGCCGAGGAGCTTTGAGTGGCTCTGCCCAAGCTGCTTTGGCGCTCACCACATACCAAAATATACTCATGAGACAGAACTCAATGAACTCAAATCCTAGTTCGCATCAACAGGAGGCGTTATCTTCCTTCAACAATTCTAATCAGATTCCATCCTCTAGCTTCCAAGGTAATGCCTCTTTGATCCCTGGCTCTATGCAGAACTCTTCGGCCAGTGGCTTTTCAAGCCCGAATCTGCCTCCACCACAGTCTCAGCTGCATGTTCTCACGCAAAGGTCCCTGAGCTCTAATAGTCTCCTTCAACAAAGCCATCCTCAGGGTCAGGGCAATCAAGCTTTACAGCATCAGATGATCCAGCAGTTTTTACAGATGTCTAATACTGGATCTGGGCCAAACCCAAGCGGCAATATGATTAGAAGTGGTCTCGGATATGGCAGAAGCCCTTCCCTGTCAGCCCCAGCCACTAGCAATCTATCGGGAAGTAATGGCCCTGGGCTGGCTCCGAGTCGTAGCGACAGTTTCAAAGGTGTTTCAATCAGTAACTCTTCCGCTGGCGGTGGAAATAACGGATTCAGTCAGAGGACACCGGATTTGTCATCCGATCTTCATTTGCAAGAAGGTATGATGCCCGACATAGCCAATGATTTCTCGGATAATGGGTTTTTTAACAGTGATTTTGATGATGCTATGGATTATGTCTGGAAGGCTTGA 2541 45.45 MAPSRVAGGLAQSSSSSGIFFQADGHSQAVINSHLSSSFVNSSTSVPGTARSNLVPVSGDMNNTVLNSVANSGPSVGASSLVTDANSAFSGGAHLQRSASINNESYMRLPASPLSFSSNNLSISGSSVMDGSSVVQQNSQQDHNSQQIQQNQLQSQQGASSATSLPTSQTGQVSLPLGARLSGSFVPDTGNFSQVQKKPRLDAKQEDILPQQVLQQLFQRQDSLQLQGRNPQLQALLQQQRLRQQQQILQSMPQLQRAQLQQQQQMQLRQQLQQQAMQPSSPMKRSYDGGICSRRLMQYLYHQRQRPPDNSIAYWRKFVTEYYSPRAKKRWCLSLYDNVGHHALGVFPQAAVDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPRECRFNSGIMMLEYGRAVQESVYEQLRVVREGQLRIIFTNELKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTISEGRSDGVSQKDLQANSNMVLTAGRQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLVDFSREHKIGPIEGLKNYPRHAAAAKLQIKKMQEMEQLASVQGLPTDRNTLNKLMAMHPSLNNQVNSNHQMVGRGALSGSAQAALALTTYQNILMRQNSMNSNPSSHQQEALSSFNNSNQIPSSSFQGNASLIPGSMQNSSASGFSSPNLPPPQSQLHVLTQRSLSSNSLLQQSHPQGQGNQALQHQMIQQFLQMSNTGSGPNPSGNMIRSGLGYGRSPSLSAPATSNLSGSNGPGLAPSRSDSFKGVSISNSSAGGGNNGFSQRTPDLSSDLHLQEGMMPDIANDFSDNGFFNSDFDDAMDYVWKA 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3255013 3259802 + Bda020641.1 Bda05g00054 6366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00054 846 Pfam LIM-domain binding protein 295 555 IPR029005 -
Bda05g00054 846 MobiDBLite consensus disorder prediction 734 808 - -
Bda05g00054 846 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Bda05g00054 846 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 188 839 - -
Bda05g00054 846 MobiDBLite consensus disorder prediction 637 697 - -
Bda05g00054 846 PANTHER LIM DOMAIN-BINDING PROTEIN 188 839 IPR029005 -
Bda05g00054 846 Coils Coil 255 275 - -
Bda05g00054 846 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Bda05g00054 846 MobiDBLite consensus disorder prediction 127 174 - -
Bda05g00054 846 MobiDBLite consensus disorder prediction 759 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00054 Bda-Chr5:3255013 Bda07g01884 Bda-Chr7:36290989 0 dispersed
Bda05g00054 Bda-Chr5:3255013 Bda01g01383 Bda-Chr1:49717568 4.01E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00054 - - pper:18787712 1126.31