Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00059 ATGGTTTTTAATGAGCAAATTTTTCCTTTCTCTAATTTGCTTTCATCAACACCTGCAACTACCACAGCACCCATCATATCATCCTTACCCTTTACACCTACCCCTCATCATTATCTTTCTCCTTCCAGCACACAGCTCCCAAACATTCCTCACCCTTCTATTTCGTCTTCATCTCTTCCCTCCTCTTCCTCTTCCGTGCATGAACAACCAGTGAGATCACCAGCACTGGCAATTGCGATTCATCATCATATGGTGACTCGGTCAAAATCTGGTATTTTTAAACCTAAGCTTTTTTTCAGTAGTGCTAAAAATGTTCTGTGTGAACCATCTTCATACAGCGAGGCGTGTAAACACAAGGAATGGCGTGAGGCGATGCAAACTGAGTTTAATGCTCTGCAGTCTCAAGGTACATGGTTGCTAGTTCCGAAACCTGGCTCCTCTCAAATTATTGGTTCCAAATGGGTTTACAGGATTAAACTGTGTCCAGACAGATCAATTGATCGTATTATGACTGATCCAGATGCTCCCAGCCCCAGCGATCCATGCTTAAGAGAACATCTTCACTGGATGGTCACAGATATTCCAGGCACTACTAATGCTTCCTTCGGTGAAGAAATAATAAGCTACGAGACGCCAAAGCCAATGGTTGGAATCCACAGATACGTGTTCATCTTGTTCAAGCAAAGAGGAAGACAGACAGTGAGACCTCCATCATCAAGAGATCATTTCTGCACCAGAACCTTCGCAGAAGTCAATGGCCTCTCTCTTCCAGTTGCAGCAGTTTATTTCAACGCCCAGAGAGAAACGGCTGCAAGAAGAAGATGA 825 43.88 MVFNEQIFPFSNLLSSTPATTTAPIISSLPFTPTPHHYLSPSSTQLPNIPHPSISSSSLPSSSSSVHEQPVRSPALAIAIHHHMVTRSKSGIFKPKLFFSSAKNVLCEPSSYSEACKHKEWREAMQTEFNALQSQGTWLLVPKPGSSQIIGSKWVYRIKLCPDRSIDRIMTDPDAPSPSDPCLREHLHWMVTDIPGTTNASFGEEIISYETPKPMVGIHRYVFILFKQRGRQTVRPPSSRDHFCTRTFAEVNGLSLPVAAVYFNAQRETAARRR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3469025 3473691 - Bda020648.1 Bda05g00059 6371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00059 274 PANTHER CEN-LIKE PROTEIN 1 168 273 - -
Bda05g00059 274 SUPERFAMILY PEBP-like 169 269 IPR036610 -
Bda05g00059 274 MobiDBLite consensus disorder prediction 40 67 - -
Bda05g00059 274 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 168 273 IPR035810 -
Bda05g00059 274 Pfam Phosphatidylethanolamine-binding protein 169 261 IPR008914 -
Bda05g00059 274 Gene3D - 108 274 IPR036610 -
Bda05g00059 274 CDD PEBP_euk 169 265 IPR035810 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00059 K06910 PEBP, TFS1; phosphatidylethanolamine-binding protein - cit:102625223 202.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00059 Bda-Chr5:3469025 Bda14g00934 Bda-Chr14:7422026 4.86E-34 dispersed
Bda05g00059 Bda-Chr5:3469025 Bda09g01410 Bda-Chr9:45981122 5.66E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g618 . . Bda05g00059 . Bpe03g00295 . Bma10g01214 . Cmo16g00145 . . . . . Sed07g1050 . Cpe14g00117 Bhi01g01345 Tan01g0271 Cmetu06g0928 . Hepe07g0175 Mch10g0171 . . . . . . . . . . . . Lsi05g01247 . . Cme06g00979 Blo07g00420 . . . . . . . . . . Cma16g00139 . Car16g00123 . . . . . . . . . . Cla05g00863 Cam05g0950 Cec05g0955 Cco05g0955 Clacu05g0937 Cmu05g0895 Cre05g0979 . Csa03g01693 Chy06g00927 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015526 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00059 Bda_Chr05 FPKM 5.990856 6.43418 7.286539 6.909814 6.050276 4.994547 6.099702 14.971905 13.260439