Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00060 ATGCTGAAGCACCTTAGCTTGAGCAACAACTTGTTGACGGGTTCAATCCCTGAAGAAATATGTAATGCAGTGTCTTTAACCGAGATCGATCTTGACAATAATTTTTTGTCGGGTACTATCGAAAATGCTTTCGTGAACTGTAGAAATCTAACTCAGCTGGTTTTGGTGGATAATCAGCTTGTTGGTTCAATCCCAGAGTACCTTTTGCAGCTTCCTTTAATGGTGGTTGATCTTGACTCTAACAATTTCACTGGTTCTTTACCTGTAACTATATGGAGCGCTGTGAACTTAATGGAATTTTCTGCTTCAAATAATCAACTTCGGGGGCCTCTTCCATTAGAGATTGGTAATGCAGCTGCATTGCAAAGACTTGTTCTTTGTAATAACATGTTGACTGGCACCATACCAAAGGAAATTGGAAATCTCTCAGCTCTTTCCGTTCTAAATTTGAATTCAAATCTGCTCAAAGGAACTATTCCACCCGAAGTTGGAGATTGCCTTGCATTAACCACTCTAGACCTTGGAAATAACAGCCTAAATGGATCAATTCCTGAAAAAATTGGGGATCTGGCTCAATTACAATGCTTAGTTCTTTCACACAATGTTTTATCAGGGCCTATTCCTTCTAAGCCTTCTGCTTATTTTCGACAGGTGAATATTCCTGATTTGAGCTTTATTCAGCACCTTGGAGTCTTTGATCTCTCTTATAACAGGTTGTCTGGCTCAATACCAGAGGAACTAGGAAACTGCAAAGTGATAGTGGATCTTTTGATTAACAACAATCAGCTTTCCGGAAAAATTCCGAGCTCGTTGTCTCGGTTGACAAATCTTACAACCTTGGATTTATCTGGGAATATGTTAACTGGTTCAATTCCTCGAGAATTTGGCGACGCTATCAAACTTCAAGGTTTGTATCTGGGAAATAATCAGCTCATTGGAACTATCCCAGAGAGCTTAGGTCAATTAAGCCGCTTGGTGAAGCTGAATTTAACTATGAATAAGCTATCTGGATTAGTTCCTGGAACCCTTGGCAAGCTGAAAGATCTTACCCATTTGGATCTAAGCTCAAATGAATTAAATGGTGAGCTTCCTTCTTCCCTTTCCACCTTGCTGAACCTTGTGGGCCTTTACGTCCAGCAGAACAGACTCTCTGGTCCAGTCGATGAGCTGTTCTTGAATTCAACTTCATGGAGGATCGAAACAATGAATTTGAGCAATAATTTCTTTGAAGGAGTGATCCCGAAATCTTTGAGCTATCTCTCGTACTTGACTTCGTTAGACTTCCATGGAAACTTGTTTACAGGATCAATCCCTGCAGAAATCGGAGACTTGATGCAACTTGAGTATTTCGATGCGTCGAGAAACGAGCTTTCCGGGCAGATCCCCGATAAAATATGCAATCTGATGAACCTTTTTTACCTGAATTTGGCAGAAAATAGATTGGAGGGTCCCATTCCCAGAAATGGTATTTGCCAAAATCTATCAAAGAATGTGCTGGCTGGAAACAAAGACCTCTGTGGTAGAATAATGGGTCTAGATTGTCAGATCAAAAACTTGGAGACATCTGCTTTGGTAAATGCTTGGAAAGTTACTGGAATTGTTGTTGGATGTATGATTCTCATTTTCACTGCAGCTTTTGCAATGAAAAGGTGGGTTAGAAGAAGCAGCAGGCGAACTGAGACAGATGAAATGGAGGAAAGCAAGCTCAATGGCTTCCTAGACCCAAACATTTACTTCTTAAGTAGCAGCCGATCGAAAGAACCTCTGAGCATTAACGTGGCCATGTTTGAGCAGCCTCTTCTGAAACTAACGTTGGTTGATATTCTTCAAGCTACCAACAATTTCTGCAAGACAAACATCATAGGAGATGGAGGATTTGGAACTGTCTATAAGGCCACTCTGCCTAACGGAAAAATAGTCGCTGTGAAGAAGCTAAGTGAGGCTAAGTCGCAGGGCCACCGAGAATTTATGGCTGAAATGGAAACTTTGGGCAAAGTAAAACACCAGAATCTCGTTTCGCTTCTGGGGTATTGCTCACTTGGAGAGGAGAAGGTTCTAGTCTATGAGTATATGGTGAATGGAAGCTTGGATCTATGGTTGAGAAACAGGACCGGAACTCTCAAGAATCTTAGCTGGGAGAGGCGGTTCAACATTGCCTCCGGTTCGGCTCGTGGGTTAGCATTTCTTCACCATGGATTCATTCCCCATATCATTCATAGAGACATTAAGGCAAGTAACATCCTCCTCAACGAAGAATTCGAGCCAAAAGTTGCAGATTTTGGGCTGGCTAGACTGATTAGTGCTTGTGAGACTCATGTCACAACTGACATTGCCGGAACTTTCGGATATATTCCTCCTGAGTATGGCCAGAGTGGTCGGTCCACGACGAAAGGCGATGTCTATAGCTATGGCGTGATTCTGCTTGAATTGGTGACGGGAAAAGAGCCGACAGGACCGGATTTTAAGGAAATTGACGGAGGAAACTTAGTTGGATGGGTGTTCAGAAGATCAAAAAGGGACATGCTGTTGATGTTCTTGATCCAACTGTTTTGA 2553 42.11 MLKHLSLSNNLLTGSIPEEICNAVSLTEIDLDNNFLSGTIENAFVNCRNLTQLVLVDNQLVGSIPEYLLQLPLMVVDLDSNNFTGSLPVTIWSAVNLMEFSASNNQLRGPLPLEIGNAAALQRLVLCNNMLTGTIPKEIGNLSALSVLNLNSNLLKGTIPPEVGDCLALTTLDLGNNSLNGSIPEKIGDLAQLQCLVLSHNVLSGPIPSKPSAYFRQVNIPDLSFIQHLGVFDLSYNRLSGSIPEELGNCKVIVDLLINNNQLSGKIPSSLSRLTNLTTLDLSGNMLTGSIPREFGDAIKLQGLYLGNNQLIGTIPESLGQLSRLVKLNLTMNKLSGLVPGTLGKLKDLTHLDLSSNELNGELPSSLSTLLNLVGLYVQQNRLSGPVDELFLNSTSWRIETMNLSNNFFEGVIPKSLSYLSYLTSLDFHGNLFTGSIPAEIGDLMQLEYFDASRNELSGQIPDKICNLMNLFYLNLAENRLEGPIPRNGICQNLSKNVLAGNKDLCGRIMGLDCQIKNLETSALVNAWKVTGIVVGCMILIFTAAFAMKRWVRRSSRRTETDEMEESKLNGFLDPNIYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILQATNNFCKTNIIGDGGFGTVYKATLPNGKIVAVKKLSEAKSQGHREFMAEMETLGKVKHQNLVSLLGYCSLGEEKVLVYEYMVNGSLDLWLRNRTGTLKNLSWERRFNIASGSARGLAFLHHGFIPHIIHRDIKASNILLNEEFEPKVADFGLARLISACETHVTTDIAGTFGYIPPEYGQSGRSTTKGDVYSYGVILLELVTGKEPTGPDFKEIDGGNLVGWVFRRSKRDMLLMFLIQLF 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3492559 3495111 + Bda020649.1 Bda05g00060 6372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 400 837 - -
Bda05g00060 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Bda05g00060 850 Pfam Leucine Rich Repeat 2 22 IPR001611 GO:0005515
Bda05g00060 850 Pfam Leucine Rich Repeat 25 47 IPR001611 GO:0005515
Bda05g00060 850 Pfam Protein kinase domain 618 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 276 418 - -
Bda05g00060 850 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Bda05g00060 850 Pfam Leucine rich repeat 256 311 IPR001611 GO:0005515
Bda05g00060 850 ProSitePatterns Protein kinases ATP-binding region signature. 621 644 IPR017441 GO:0005524
Bda05g00060 850 Gene3D Phosphorylase Kinase; domain 1 578 690 - -
Bda05g00060 850 SMART LRR_typ_2 226 250 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 420 444 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 168 190 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 274 297 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 1 23 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 322 345 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 346 370 IPR003591 -
Bda05g00060 850 SMART LRR_typ_2 142 166 IPR003591 -
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 276 418 - -
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 297 - -
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 400 837 - -
Bda05g00060 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 297 - -
Bda05g00060 850 PRINTS Leucine-rich repeat signature 274 287 - -
Bda05g00060 850 PRINTS Leucine-rich repeat signature 169 182 - -
Bda05g00060 850 SUPERFAMILY L domain-like 222 507 - -
Bda05g00060 850 SUPERFAMILY Protein kinase-like (PK-like) 596 820 IPR011009 -
Bda05g00060 850 SMART LRR_sd22_2 274 295 - -
Bda05g00060 850 SMART LRR_sd22_2 370 389 - -
Bda05g00060 850 SMART LRR_sd22_2 444 470 - -
Bda05g00060 850 SMART LRR_sd22_2 166 192 - -
Bda05g00060 850 SMART LRR_sd22_2 346 369 - -
Bda05g00060 850 SMART serkin_6 615 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00060 850 Gene3D Transferase(Phosphotransferase) domain 1 691 846 - -
Bda05g00060 850 SUPERFAMILY L domain-like 2 209 - -
Bda05g00060 850 ProSiteProfiles Protein kinase domain profile. 615 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00060 850 Gene3D Ribonuclease Inhibitor 1 215 IPR032675 -
Bda05g00060 850 Gene3D Ribonuclease Inhibitor 216 517 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00060 Bda-Chr5:3492559 Bda11g00199 Bda-Chr11:2542397 2.32E-33 dispersed
Bda14g01371 Bda-Chr14:16076482 Bda05g00060 Bda-Chr5:3492559 1.04E-15 dispersed
Bda14g01586 Bda-Chr14:34138287 Bda05g00060 Bda-Chr5:3492559 7.37E-19 dispersed
Bda05g00060 Bda-Chr5:3492559 Bda08g00020 Bda-Chr8:186272 3.20E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69614 PF00069 Pkinase 2.70E-44 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00060 - - csv:101215443 1304.66