Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00064 ATGGGCGTTAAGAACTTGTGGGACATCTTGGAGTCCTGCAAGAAAACGCATCCACTTCACCAACTTCACAAACATATTCCAACTCGGGTTGATCAGTTTTTGCCCGTGATCGATGCGTATTTACGACCCAAGTGCCACTCAGCAGATTCTGATGTTGTTCAAAGAGTTCTTGTCAATCATCCATTTCGGCGAATCGAACTTCATCAGATATGTGCTCGGTTTTTCGAATGGCCACCTGAGAAAACAGATGAGTACATCCTTCCTAAGATTGCTGAACGAAATTTACGAAGATTTTCCGATCTACGATCAGTTTCATCGGAACTTGGGTTGAAGCCTCCGCTGGAAGAGATACCTATTAAGTGTCCAGTCTCGGAAATTCTCAAGAATCGGAAAGTTCAGGGGAAAGAATGTTTTGAGGTTTCTTGGGATGGATTTGAAGGACTTAAATCTTCAGTAGTTCTGAAAGATCTCTTAGAGAGACTTCCCTTTTTGATCTACTTCAGTGCTTGTCCTGAAAAAATCATGGAGTTTGAGGAGAAAAGAGCTCAAAATCGTCGCAAAACCAAACCAAAGAAATCGAAAGAAGGGTCTGCATTGATTGAACTCGATAAAAAACTCCAAGCTTTGTTGCTCGAAATCGAATCTGAAGACCGGGTAGTTTTCTCGAGAGGATTTTCAGAGACAAAAATATCCAGCTCTTGTTCGTCGTCGTCCAGTCAGGTTGGTCCAACTGCCGTCAACAGTGAAGTCATCGATCTGTCAAGTCCTTCCCCGCTGCCTAGACCGGGTAAGCCTCGGAATCGTGAAGACAAAAATGCTAAAAGGGATAATGTGATTGATTTGAGTGAGTCAGAAAATGATAAATCTCCTGATGAACATGAGAGGAAAGCAAGAGAATTAAGAGCATTTATCTCTACAATTAGAGATGATTGA 933 42.12 MGVKNLWDILESCKKTHPLHQLHKHIPTRVDQFLPVIDAYLRPKCHSADSDVVQRVLVNHPFRRIELHQICARFFEWPPEKTDEYILPKIAERNLRRFSDLRSVSSELGLKPPLEEIPIKCPVSEILKNRKVQGKECFEVSWDGFEGLKSSVVLKDLLERLPFLIYFSACPEKIMEFEEKRAQNRRKTKPKKSKEGSALIELDKKLQALLLEIESEDRVVFSRGFSETKISSSCSSSSSQVGPTAVNSEVIDLSSPSPLPRPGKPRNREDKNAKRDNVIDLSESENDKSPDEHERKARELRAFISTIRDD 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3540818 3544719 + Bda020653.1 Bda05g00064 6376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00064 310 MobiDBLite consensus disorder prediction 229 298 - -
Bda05g00064 310 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 25 IPR006084 -
Bda05g00064 310 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 31 231 - -
Bda05g00064 310 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 31 231 IPR006084 -
Bda05g00064 310 MobiDBLite consensus disorder prediction 229 254 - -
Bda05g00064 310 MobiDBLite consensus disorder prediction 263 298 - -
Bda05g00064 310 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00064 K15338 GEN1, GEN; flap endonuclease GEN [EC:3.1.-.-] - qsu:111998992 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00064 Bda-Chr5:3540818 Bda05g00069 Bda-Chr5:3670834 6.11E-09 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00064 Bda_Chr05 FPKM 14.299905 14.74404 13.513907 14.239686 20.425951 20.763544 20.348074 14.647188 13.112955