Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00066 ATGTCAGATCTTCAGGTCCAAGAACACAATCATCCTCACATACTTCTTCTGCAAATTGGCAATACATTTTGCAAACTTCCCGGTGGGCGCCTGAAACCAGGAGAAAATGAAATTGAAGGTCTAAAAAGAAAATTAACTAGCAAGCTTGGTGCTAATTCAGCTGCTCTCATACCAGACTGGCAGATTGGTGAATGTGTGGCTACGTGGTGGAGGCCAAATTTTGAAACCATGATGTATCCATATTGTCCTCCCCACATAACAAAACCCAAGGAGTGTAAAAAGCTTTTCCTTGTGCACTTGTCTGAAAGAGAGTACTTTGCAGTGCCTAAGAATTTGAAACTTCTCGCGGTTCCCTTGTTCGAACTCTATGATAATGTCCAGAGATATGGGCCGGTAATATCGACCATCCCACAGCAGCTGTCTAGATTCCAATTCAACATGATCACTACATAA 453 42.38 MSDLQVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSAALIPDWQIGECVATWWRPNFETMMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3546557 3547696 + Bda020655.1 Bda05g00066 6378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00066 150 SUPERFAMILY Nudix 10 102 IPR015797 -
Bda05g00066 150 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 4 149 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bda05g00066 150 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 4 147 - -
Bda05g00066 150 Pfam Nucleotide hydrolase 6 143 IPR016706 GO:0003729|GO:0005849|GO:0006378
Bda05g00066 150 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2 4 149 - -
Bda05g00066 150 PIRSF CPSF-25 4 150 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00066 K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5 - pop:7454504 304.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00066 Bda07g01863 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00066 Bda-Chr5:3546557 Bda07g01863 Bda-Chr7:36044735 1.25E-108 dispersed
Bda05g00066 Bda-Chr5:3546557 Bda05g00070 Bda-Chr5:3676597 5.29E-109 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g657 . . Bda05g00066 Bda07g01863 Bpe03g00290 . Bma10g01220 Bma14g02087 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1154 Cone5ag0863 . . . . . . Blo07g00414 Blo09g00108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001250 4 2 3 6 3 1 4 1 1 2 1 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 3 3 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00066 Bda_Chr05 FPKM 14.144422 14.251578 22.69306 20.224546 7.573518 7.256915 7.348917 23.420256 23.99062