Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00073 ATGAATTCAATATCTCGATTGGGTCTTCAATTTTGTCAGAAAGTTTCAAAGTTTTACACGGTTTCTAGAAAATTATGCTACATACTCTTTGACGGTGATAAAGGAGATGATGATGCTGGGAGTTTTGAGGAATCAGTAAAAAGGATGTGGAAAAGTCATGATTTTGATTCTGGTGTTATGGACACACTCAACAAGGACGATTATGAGAGATGTGAAGACGAAAATTCGTCGACCAGAAAGGGTATTTTTCAGGATGTGAGAGTTCATGCTAGAAGGGTTCTTGAAATTCTAAGACAAGATGGTCCTGGTTTTGACACGAAATCAGCTTTATCTGAGCTGCAAATAAGGGTCTCAGGGCCTCTTGTTAGGGAAGTTCTTTTGGGGATTTTGCGAAGCATAAATTATGTGGATAAAACCCGTTGTGCACAATTGGCCTACAAGTTTTTCTTATGGTCTGGCGAGCAGAACAGTTTTAGGCACACAGTTAGTTCATATCATCTAATTATGAAGATATTTGCTCAATGTGAAGAATTTAAGGCAATGTGGAGGCTAGTGGATGAGATGGCTCAGAATGGGTACCCTATGACGGCACGTACGTTTAACATTTTAATATGTACTTGTGGAGAGGCGGGTCTAGCTAGAAAAGTTGTGGAAAGGTTTATAAAATCCAAAACATTCAGTTATAGACCATTTAAACACTCTTACAATGCTATTTTGCATTCACTTATTGGTATAAACCAGTACAAGTTGATTGAATGGGTCTACCGGCAGATGTTGGTTGATGGTCATGATCCCGACATTCTGACTTATAATATACTGATGTGTGCGAAGTTTAAGTTGGGAAAGTTAACCGAATTTCACTTACTGTTAGATGAAATGGGTCAGAGTGGATTTTCTCCAGATCATCATACATATAACATTCTCCTTCATGTTCTTGGAAGAGGGGACAAACCACTCGCAGCTCTTAATCTTTTGAATCACATGAAGGAATCAGGATTTGATCCTAGTGTTCTTCACTTCACGACATTGATCGATGGACTTAGTCGGGCTGGAAATTTGGAAGCATGCAAATATTTTTTCGATGAAATGCGAAAAAATGGTTGCAGTCCAGATGTTGTTTGCTACACTGTAATGATAACGGGGTATGTCGCTGCTGAGGAGCCTGAGAAGGCTCAGGAATATTTTGCTGAAATGATAATGCAAGGGCAGCTACCAAACGTATTTACTTATAACTCGATGATTCGTGGGTTTTGCATGGCGGGTAAATTTGAGGAGGCATTATCTTTGCTCAAGGAAATGGAATCCAGAGGGTGTAGTCCGAATTTCGTAATTTACAGTACTCTTGTGAGTAATTTACGAAATGCAGGGAAGCTATCTGAGGCTCACGATGTGATCCGGCATATGATGGGGAAAGGGCAATATGTTCATTTAGCCCTGAAGTTAAAGAGATACAGGCGATGCTAA 1464 39.69 MNSISRLGLQFCQKVSKFYTVSRKLCYILFDGDKGDDDAGSFEESVKRMWKSHDFDSGVMDTLNKDDYERCEDENSSTRKGIFQDVRVHARRVLEILRQDGPGFDTKSALSELQIRVSGPLVREVLLGILRSINYVDKTRCAQLAYKFFLWSGEQNSFRHTVSSYHLIMKIFAQCEEFKAMWRLVDEMAQNGYPMTARTFNILICTCGEAGLARKVVERFIKSKTFSYRPFKHSYNAILHSLIGINQYKLIEWVYRQMLVDGHDPDILTYNILMCAKFKLGKLTEFHLLLDEMGQSGFSPDHHTYNILLHVLGRGDKPLAALNLLNHMKESGFDPSVLHFTTLIDGLSRAGNLEACKYFFDEMRKNGCSPDVVCYTVMITGYVAAEEPEKAQEYFAEMIMQGQLPNVFTYNSMIRGFCMAGKFEEALSLLKEMESRGCSPNFVIYSTLVSNLRNAGKLSEAHDVIRHMMGKGQYVHLALKLKRYRRC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3701009 3702472 + Bda020663.1 Bda05g00073 6385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Bda05g00073 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 487 - -
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Bda05g00073 487 PANTHER OS10G0506000 PROTEIN 1 487 - -
Bda05g00073 487 Pfam PPR repeat family 335 382 IPR002885 -
Bda05g00073 487 Pfam PPR repeat family 265 312 IPR002885 -
Bda05g00073 487 Pfam PPR repeat family 405 452 IPR002885 -
Bda05g00073 487 Gene3D Tetratricopeptide repeat domain 246 328 IPR011990 GO:0005515
Bda05g00073 487 Gene3D Tetratricopeptide repeat domain 400 471 IPR011990 GO:0005515
Bda05g00073 487 Gene3D Tetratricopeptide repeat domain 329 399 IPR011990 GO:0005515
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 443 472 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 269 301 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Bda05g00073 487 TIGRFAM PPR: pentatricopeptide repeat domain 408 441 IPR002885 -
Bda05g00073 487 Gene3D Tetratricopeptide repeat domain 106 243 IPR011990 GO:0005515
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Bda05g00073 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00073 - - - qsu:112001594 735.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00073 Bda-Chr5:3701009 Bda01g00240 Bda-Chr1:26583469 8.03E-14 dispersed
Bda05g00073 Bda-Chr5:3701009 Bda12g00641 Bda-Chr12:30633847 1.38E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00073 Bda_Chr05 FPKM 8.751055 13.231212 2.28435 3.175952 2.795812 3.230293 2.427396 0.0 1.083726