Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00074 ATGGTGTGTCCTGACTACTTTCGTTGGATTCACGAGGACCTACGACCGTGGGCGCATACGGGCATATCGAGGGATATGATCGAGAGAGCAAAACGAACGGCCAATTTCAGGCTAGTGATCATGAACGGAAAAGCTTACGTGGAGACGTATAAGAAGTCGTTTCAGAGCCGTGACACGTTTACATTATGGGGAGTCCTACAATTACTAAGGACATATCCTGGGAAATTGCCTGATTTGGAGATCATGTTCGACTGCGTTGACTGGCCCGTTATTTTGTCAAACGCATATACTGGGCCCCGCTCTTCGACCCCACCTCCTTTGTTTCGCTATTGTGGAGACGATGCCACATTGGATATCGTGTTTCCTGATTGGTCCTATTGGGGATGGCCGGAGATAAATATAAAGCCATGGGAGCCATTGCTGAATGATCTAAAAGAGGGAAATAAGAAGAGAAGTTGGGTTAGCAGGGAACCTGTTGCCTATTGGAAGGGAAATCCAGCAGTTGCTCCAACAAGGCAAGACCTCCTCAAGTGTAACGTCACCGAACACCAGGATTGGAATGCTAGAATTTATGCTCAGGATTGGATTCGAGAATCGCAACAAGGGTATAAGGACTCGGATCTATCAAGCCAGTGCCGACATAGGTATAAGATCTATATAGAAGGTTCAGCGTGGTCCGTTAGTGAAAAATACATCCTCGCATGCGACTCCGTGACGTTATTAGTTAAGCCTAGATACTACGATTTCTTCACGAGAAGTTTGGTCCCAATGCAGCACTATTGGCCAATAAAGGAGGACGACAAATGCAAGTCGATAAAGTTTGCTGTCGATTGGGGCAACAACAACAATCATAAGGCACAAGATATTGGAAAGAAAGCAAGCAAATTTGTTCAAGAGGACCTGAAGATGGAGTTTGTATACGACTACATGTTCCATCTTTTATCAGAATATTCAAAACTCTTAACCTTCAAGCCGAGAATCCCGGAAAATGCTAAGGAGCTATGTTCGGAAACGATGGCCTGCCAAGCAGAAGGATTAACGCGCAAATTCATGGAAGATTCGTTGGTAAAAAGTCCTTCGGATAAACCACCATGCACGATGCCACCACCTTTGGATCCTCCTTCTCTTCGGGCCGTTATCAGGACAAGAGAAAACTCTATCAAGAAAGTTGAAGAAATGGAGAAAACTTTCAGGAAAAGTCGAAGCAAATAG 1212 44.88 MVCPDYFRWIHEDLRPWAHTGISRDMIERAKRTANFRLVIMNGKAYVETYKKSFQSRDTFTLWGVLQLLRTYPGKLPDLEIMFDCVDWPVILSNAYTGPRSSTPPPLFRYCGDDATLDIVFPDWSYWGWPEINIKPWEPLLNDLKEGNKKRSWVSREPVAYWKGNPAVAPTRQDLLKCNVTEHQDWNARIYAQDWIRESQQGYKDSDLSSQCRHRYKIYIEGSAWSVSEKYILACDSVTLLVKPRYYDFFTRSLVPMQHYWPIKEDDKCKSIKFAVDWGNNNNHKAQDIGKKASKFVQEDLKMEFVYDYMFHLLSEYSKLLTFKPRIPENAKELCSETMACQAEGLTRKFMEDSLVKSPSDKPPCTMPPPLDPPSLRAVIRTRENSIKKVEEMEKTFRKSRSK 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3706066 3708405 + Bda020664.1 Bda05g00074 6386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00074 403 MobiDBLite consensus disorder prediction 357 376 - -
Bda05g00074 403 Pfam Glycosyl transferase family 90 2 394 IPR006598 -
Bda05g00074 403 SMART cap10 75 324 IPR006598 -
Bda05g00074 403 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 2 401 - -
Bda05g00074 403 PANTHER MOTIF-CONTAINING PROTEIN 1, PUTATIVE-RELATED 2 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00074 - - - csv:101212790 664.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01235 Bda-Chr3:17018072 Bda05g00074 Bda-Chr5:3706066 0 dispersed
Bda05g00074 Bda-Chr5:3706066 Bda07g01851 Bda-Chr7:35879997 0 dispersed
Bda05g00068 Bda-Chr5:3651658 Bda05g00074 Bda-Chr5:3706066 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00074 Bda_Chr05 FPKM 11.517045 12.373765 2.733958 2.65325 4.880871 6.311814 4.888651 1.649648 1.458004