Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00075 ATGGTGAGCCGGAGGCAGAAGGTAGCCCGGAAATTGTACAGAGAAACTCATCCGGATCTCTTTCCAAAACCAGAAGCAACGAACCCGAAAGACCCTGACAAAAAGAAGAAGAATAAGAGCAAGTTTAAGCGTAAAAAGACGGAGAATGGAGCTTCAAAACCCAATAGGAAAGGGTTTAAAAAACACCCTCTTAGAGTTCCTGGAATGAAGCCTGGTGAAAGCTGTTTCATCTGCAAAGCTAAAGACCATGTTGCTAAGCTTTGTCCTCAGAAAGCCGAGTGGGAAAAGCATAAGATATGCTTGCTTTGTAGACGTCGCGGGCATAGTCTGAAGAATTGCCCCGACAAAAATAGTGAGATAAAGGATAAAAAGATATGCTATAATTGTGGAGAAACAGGACATTCACTTGATAAATGCAGCCTGCCACTTCAAGATGGGGGAAGTAGATATGCGAGCTGCTTTATTTGTAATGAACAAGGTCACTTAAGCAAAGACTGCCATCGAAATACTCGTGGAATCTACCCGAAGGGGGGTTGCTGTAAAATTTGTGGTGGTGTGACACATTTGGCTAAAGATTGTCCCAACAAAGGCACCAAATTTTCTGCTATAATCAATAAGATTGCAAGTAAAAGAGAAGAAACACCGAGAGCACGCTTGACGAAATTTACGAGTGGGGATGATCTTGAAGATGATTTTATGGTGGATGAAAAAACATATCAAAAGAGCGCAGATGAGGTTTCAGACCCAGACGGCGGCCAAGTAAAACCCAAAAAGAAGAAAGGAACAAAAGTTGTGAATTTTTTTGGATGA 810 41.85 MVSRRQKVARKLYRETHPDLFPKPEATNPKDPDKKKKNKSKFKRKKTENGASKPNRKGFKKHPLRVPGMKPGESCFICKAKDHVAKLCPQKAEWEKHKICLLCRRRGHSLKNCPDKNSEIKDKKICYNCGETGHSLDKCSLPLQDGGSRYASCFICNEQGHLSKDCHRNTRGIYPKGGCCKICGGVTHLAKDCPNKGTKFSAIINKIASKREETPRARLTKFTSGDDLEDDFMVDEKTYQKSADEVSDPDGGQVKPKKKKGTKVVNFFG 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3709743 3712291 - Bda020665.1 Bda05g00075 6387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00075 269 Gene3D - 69 122 - -
Bda05g00075 269 Gene3D - 123 172 - -
Bda05g00075 269 Pfam Zinc knuckle 125 139 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 Pfam Zinc knuckle 153 166 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 MobiDBLite consensus disorder prediction 8 35 - -
Bda05g00075 269 ProSiteProfiles Zinc finger CCHC-type profile. 153 166 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 MobiDBLite consensus disorder prediction 1 64 - -
Bda05g00075 269 ProSiteProfiles Zinc finger CCHC-type profile. 126 139 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 SMART c2hcfinal6 74 90 IPR001878 GO:0003676|GO:0008270
Bda05g00075 269 MobiDBLite consensus disorder prediction 239 257 - -
Bda05g00075 269 SUPERFAMILY Retrovirus zinc finger-like domains 122 169 IPR036875 GO:0003676|GO:0008270
Bda05g00075 269 PANTHER OS04G0555800 PROTEIN 1 268 - -
Bda05g00075 269 MobiDBLite consensus disorder prediction 239 269 - -
Bda05g00075 269 SUPERFAMILY Retrovirus zinc finger-like domains 68 117 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00075 - - - cmo:103484078 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00075 Bda-Chr5:3709743 Bda15g01069 Bda-Chr15:19914472 9.58E-06 dispersed
Bda05g00075 Bda-Chr5:3709743 Bda15g01066 Bda-Chr15:19840773 9.58E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00075 Bda_Chr05 FPKM 31.0 25.433138 47.40892 42.481327 17.855976 21.339172 23.410254 31.275694 20.182941