Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00086 ATGGTAATAACATTGAGACTACCTTCTCTGACCTCTTTATTTTTCCCGGCTTCGCGGAAAAGCATCGCCTTCTCTCGCCGAGCACCGAGAATTTACCGGCGATCGTGCGGCCGTCAGTGGGCTCCTGTAATTGCAGCTGGTTTTTCTGCACAAAGCACTGTTACAGAGACTGACGAACGAGACGTTAGCTCGAAGAATCGAGGGTCGGACCAAGTAATCACACCTCGGTCGCAGGACTTTAATGCCTGGTATTTGGATGTAATTGCCAATGCTGAGCTTGCCGATTACGGTCCGGTTCGAGGAACAATGGTCATACGCCCTTACGGCTACGCTATTTGGGAGGCCATTCAGGATTATTTAAATGTAAAGTTCAAGGAGACGGGTCATAGTAACATGTACTTTCCACAGTTTATACCATATTCATTTATTGAGAAAGAAGCTAGTCACGTTGAAGGTTTCAGTCCAGAATTAGCACTTGTTACAGTTGGAGGAGGAAAAGAACTTGAAGAAAAACTTGTGGTTCGACCTACTAGTGAAACTATAGTTAATCACATGTTCACTCAATGGATACAAAGTTACCGTGATCTTCCTCTCATGGTGAACCAGTGGGCAAATGTTACAAGATGGGAAATGCGAACAAAACCTTTTATTCGGACTCTTGAGTTTCTCTGGCAGGAAGGTCATACTGCACATGCCTCTCTAGAAGAGGCTGAAAAAGAGGCTCTTCAGATGATAGATGTCTATACCAAATTTGCTTATGAGCAAGCAGCAATACCTGTTGTTGCAGGGCGAAAATCAAAGGTGGAGACATTTGCTGGTGCAGATATTACATATACAATAGAGGCCATGATGGGTGACAGAAAGGCATTACAAGCGGGAACTAGCCATAATCTTGGACAGAACTTTTCCCGTGCCTTTGGAACACAATTTACAGATGAAAATGGACAGAGGCAAAATGTGTGGCAGACATCATGGGCCATCAGTACTCGCTTTGTTGGTGGAATCATCATGACTCACGGAGATGATGCAGGTTTAATGCTTCCTCCAAATATTGCTCCTATACAGGTAATAATTGTTCCAATTTGGAAGAAGGATGAAGAAAAAGGAGGAGTTCTAAAGGCCGCATCATCTGTAAAAGAAATTCTTCAAACTGCAGGGATAAAAGTCAAAGTTGATGACTCGGACCAAAGAACTCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGTTCTGCCTCGTCTTGTCAATGATATACGAGAAATATCTATTATTTTTGAAATACCTCCTACCTTGGTTGTGCAGGGTGTCCCTCTAAGGATAGAAATTGGTCCGCGGGATGTTCTAAGTCAGAGTGTGGTCATTTCGCGAAGAGATATTCCTGGAAAGCAAGGAAAAGTGTTTGGAATATCAATGGATGATCTGGTTTTAAAGGCTTACGTCAAAGAAAAGTTGAACGAGATCCAGTCGGCTCTTTTGAATCGAGCAATATCATTTCGAGACAGCAACATTGTGGATGTAAGGTCATACGAAGAACTCAAAGAAGCGATCTTGCTCGGGAAATGGGCGAGGGGGCCATGGTCTGCCAGTGAAGAGGATGAAAAACGAGTGAAAGGAGAGACCGGAGCGACAATTAGGTGCTTCCCTTTCGAACAACCAAAAGGGTCGAAAACTTGTCTCATGACTGGCCGTCCTGCCGTTGAAGTTGCGATTTTCGCAAAGTCATATTAG 1728 43.75 MVITLRLPSLTSLFFPASRKSIAFSRRAPRIYRRSCGRQWAPVIAAGFSAQSTVTETDERDVSSKNRGSDQVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTVGGGKELEEKLVVRPTSETIVNHMFTQWIQSYRDLPLMVNQWANVTRWEMRTKPFIRTLEFLWQEGHTAHASLEEAEKEALQMIDVYTKFAYEQAAIPVVAGRKSKVETFAGADITYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQNVWQTSWAISTRFVGGIIMTHGDDAGLMLPPNIAPIQVIIVPIWKKDEEKGGVLKAASSVKEILQTAGIKVKVDDSDQRTPGWKFNFWEMKVLPRLVNDIREISIIFEIPPTLVVQGVPLRIEIGPRDVLSQSVVISRRDIPGKQGKVFGISMDDLVLKAYVKEKLNEIQSALLNRAISFRDSNIVDVRSYEELKEAILLGKWARGPWSASEEDEKRVKGETGATIRCFPFEQPKGSKTCLMTGRPAVEVAIFAKSY 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4091640 4096192 + Bda020680.1 Bda05g00086 6398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00086 575 Pfam Anticodon binding domain 355 412 IPR004154 -
Bda05g00086 575 PANTHER BNAC09G28510D PROTEIN 433 575 - -
Bda05g00086 575 PANTHER BNAC09G28510D PROTEIN 2 413 - -
Bda05g00086 575 Gene3D - 348 418 IPR036621 -
Bda05g00086 575 SUPERFAMILY Class II aaRS and biotin synthetases 79 342 IPR045864 -
Bda05g00086 575 TIGRFAM proS_fam_I: proline--tRNA ligase 74 420 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 Pfam Prolyl-tRNA synthetase, C-terminal 509 575 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 CDD ProRS_core_arch_euk 79 338 IPR033721 -
Bda05g00086 575 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 100 348 IPR006195 -
Bda05g00086 575 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 167 336 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bda05g00086 575 Gene3D - 504 575 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 SUPERFAMILY Class II aaRS ABD-related 344 413 - -
Bda05g00086 575 PANTHER PROLYL-TRNA SYNTHETASE 433 575 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 PANTHER PROLYL-TRNA SYNTHETASE 2 413 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 Hamap Proline--tRNA ligase [proS]. 73 575 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 PRINTS Prolyl-tRNA synthetase signature 131 149 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 PRINTS Prolyl-tRNA synthetase signature 202 210 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 PRINTS Prolyl-tRNA synthetase signature 211 222 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 PRINTS Prolyl-tRNA synthetase signature 172 183 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 Gene3D - 430 497 IPR036621 -
Bda05g00086 575 SUPERFAMILY Class II aaRS ABD-related 433 501 - -
Bda05g00086 575 SUPERFAMILY C-terminal domain of ProRS 503 575 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Bda05g00086 575 CDD ProRS_anticodon_zinc 344 575 - -
Bda05g00086 575 Gene3D Bira Bifunctional Protein; Domain 2 74 347 IPR045864 -
Bda05g00086 575 SMART ProRS_C_1_2 509 575 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00086 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - cpap:110810298 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00086 Bda-Chr5:4091640 Bda13g00376 Bda-Chr13:4663631 4.48E-124 dispersed
Bda05g00086 Bda-Chr5:4091640 Bda11g00259 Bda-Chr11:3036811 1.29E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00086 Bda_Chr05 FPKM 6.725 8.090097 3.779015 6.731812 2.585013 1.954873 2.733852 18.126524 15.94226