Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00094 CTGCAGAAACTGGTGGTGGAATTGGAACTTTACGATGAAAAAACTAAGCAAAAAGCTATGAAGACAGTATCTGGTGTATTAGGTAAACTTCAATCCTTTCCAACTGCAGGTTTGTTCCTGTTTGGTTACAGAGAAAACAAAGATTCACCATTTTTTTTGTTTATTTTCGCAGGGATTCAATCGATCCAGATAGAACCAAAAAACAAGAAACTGACAGTAATCGGGGACATCGATCCTGTCTGTGTTGTGAGGAAACTAAGGAAGCATTGTCACACGACTATAGTTTCAGTAGGGCCAGCGCAAGAAGCGAAGAAGGAAGAGCCAAAAAAAGAAGCAGCCAAGAAAGAAGACGACAAGAAAGATGGTCCAAAAGATCCAGTGGCTGAGCTCGTCAAGGCTTACGAAGCTTATAATCCATACGCGACTACCCATTATTATGTTCGAAGTGCAGAGGAAGATCCCAATTCTTGTGTTATTTGCTGA 483 40.99 LQKLVVELELYDEKTKQKAMKTVSGVLGKLQSFPTAGLFLFGYRENKDSPFFLFIFAGIQSIQIEPKNKKLTVIGDIDPVCVVRKLRKHCHTTIVSVGPAQEAKKEEPKKEAAKKEDDKKDGPKDPVAELVKAYEAYNPYATTHYYVRSAEEDPNSCVIC 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4906997 4907479 + Bda020699.1 Bda05g00094 6406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00094 160 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 57 160 - -
Bda05g00094 160 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 2 28 - -
Bda05g00094 160 MobiDBLite consensus disorder prediction 97 125 - -
Bda05g00094 160 MobiDBLite consensus disorder prediction 102 125 - -
Bda05g00094 160 Gene3D - 1 103 - -
Bda05g00094 160 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 2 28 - -
Bda05g00094 160 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 57 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00094 - - - pvy:116127976 147.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00094 Bda-Chr5:4906997 Bda09g00039 Bda-Chr9:580949 1.31E-34 dispersed
Bda11g00238 Bda-Chr11:2863719 Bda05g00094 Bda-Chr5:4906997 2.63E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g770 . . Bda05g00094 . Bpe03g00155 . Bma10g01254 Bma14g02042 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0061 . Csa05g00243 . . Blo07g00373 Blo09g00061 . . . . . . . . . . . . . . . Bhi12g00777 . . . . . Lcy12g0059 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00094 Bda_Chr05 FPKM 16.536219 18.97567 3.936055 3.68707 9.539539 9.760203 8.684423 1.528167 1.320455