Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00096 ATGCTTACTATGACATATTCTCTACCGGTGATATCTAAGAGACTTGCATCCCTTAAATTTCCTTCTATTTCGACAAATGTTGTGGTATCCGCGGCTAAAGGTCCACGTCCAAGATATCCTCGTGTTTGGAAAACGAATAGAAGAATTGGAACCATTTCCAAGTCAGTAAAGCTTGTAGAGTGTATCAAAGGGCTGTCAAATGTCAAAGAGGAAATTTATGGAGCTCTCGATTCCTTTATTGCCTGGGAATTAGAGTTCCCTCTAATTACTGTGAAGAAGGCACTGAAAACACTAGAGATTCAAAAGGAATGGAAGAGAATTATTCAGGTGGCAAAATGGATGTTAAGTAAAGGCCAAGGTAGAACAATGGGAACTTATTTCACCTTATTAAATGCTTTGGCAGAGGATGGCAGACTTGATGAAGCTGAAAAGTTATGGACTAACTTATTCTCACAGCATCTAGAAAGTATGCCTCGTATTTTCTTTAATAAGATGATTACGATCTACTATAATGCGCGCATGTATGAGAAGTTGTTTGAGGTATTTGCAGACATGGAGGAACTTGGTATCCGACCAGATATGGCAACTGTTACAATGATTGGAAATGTCTTCCAAGAGCTGGGTATGTTGGATAAATATACAAAGTTGAAGAAGAAATATCCGCCTCCAAAATGGGAGTATCGATACATCAAAGGGAAGCGTATTAGAATACGGTCTACTCGTGTGAATAACTCCAACAATTATAAGCAACCTCTAAGCAAGCATGAGGAAACAGATCCTAATTCAATTGAATTGTTAGAAGGAGGAGAAACAAACTCAGATGAGGAAACAGATCCAAATTCGTTCGAAATGTTAGAAGGAGAAGCAGACTCAAATGAACCAGAGGAACTTATGCCAATCGAAGATCAAATGAATGAACAGATGCATGTTAAGTTGTTGAATGACGGCCTCATCGCTCAAAGCAGGTATTCTTCTTGA 978 38.75 MLTMTYSLPVISKRLASLKFPSISTNVVVSAAKGPRPRYPRVWKTNRRIGTISKSVKLVECIKGLSNVKEEIYGALDSFIAWELEFPLITVKKALKTLEIQKEWKRIIQVAKWMLSKGQGRTMGTYFTLLNALAEDGRLDEAEKLWTNLFSQHLESMPRIFFNKMITIYYNARMYEKLFEVFADMEELGIRPDMATVTMIGNVFQELGMLDKYTKLKKKYPPPKWEYRYIKGKRIRIRSTRVNNSNNYKQPLSKHEETDPNSIELLEGGETNSDEETDPNSFEMLEGEADSNEPEELMPIEDQMNEQMHVKLLNDGLIAQSRYSS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4929323 4931168 + Bda020701.1 Bda05g00096 6408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00096 325 MobiDBLite consensus disorder prediction 269 295 - -
Bda05g00096 325 Pfam PPR repeat 128 146 IPR002885 -
Bda05g00096 325 Pfam PPR repeat 162 190 IPR002885 -
Bda05g00096 325 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Bda05g00096 325 MobiDBLite consensus disorder prediction 241 295 - -
Bda05g00096 325 Gene3D Tetratricopeptide repeat domain 53 222 IPR011990 GO:0005515
Bda05g00096 325 PANTHER OS01G0757700 PROTEIN 4 276 - -
Bda05g00096 325 TIGRFAM PPR: pentatricopeptide repeat domain 162 193 IPR002885 -
Bda05g00096 325 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Bda05g00096 325 PANTHER OS01G0757700 PROTEIN 4 276 IPR044646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00096 - - - csv:101209439 394.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00096 Bda-Chr5:4929323 Bda08g00441 Bda-Chr8:4465460 1.40E-61 dispersed
Bda05g00096 Bda-Chr5:4929323 Bda10g00525 Bda-Chr10:38896193 1.27E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g784 . . Bda05g00096 . Bpe03g00260 . Bma10g01260 . . Cmo18g01307 . . . . Sed07g2526 . . Bhi01g01417 Tan01g0183 Cmetu10g1018 . Hepe07g0115 Mch10g0118 . . . . . . . . . . Cone14ag0053 . Lsi05g01184 . . Cme06g01045 Blo07g00369 . . . . . . . . . . . Cma18g01276 . Car18g01190 Cpe09g00061 . . . . . . . . Cla05g00923 Cam05g1011 Cec05g1015 Cco05g1011 Clacu05g1000 Cmu05g0953 Cre05g1034 . Csa03g01757 Chy06g00985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010882 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00096 Bda_Chr05 FPKM 12.631389 13.969152 9.809608 11.63678 18.78467 21.466206 23.262794 6.157374 5.685749