Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00106 ATGGAGAATATGCTGTATGCCGAAGAGCTTGTGAGAGAGTTTCTTATTTTCAGGGGATTTTCTGGTACACTGCAAGCTTTTGAGGCTGAACTAACCACCGATATCGGAAAAGCAATTCCATATTTAAAGAACCCAAGCTTGGATCCAGATTTTCGTGTTTATTTTTCAAAGGAATGGCATGAGTCATTGCGTGTTTCTGTGAGGAATTTCTTCAGTAAGGTTTCATCCGGTGTACAACACGAAGAAAATATTCTTCGATCCACAGATAATCTGGAAGCTTGTTCACATGCTTCCCTTCAATCAAGAGAAACTGAGCTGCTGGATAGAGCTGTTTCTCAACCTGCTGAAATTCATCCGGATCTTATGACGTCCAACACTTGTCACGTCTCAAGCTCTTCACAAAAACTTGATCTGGAAGATGAAGATATTGGCAGTGCAAGCTATGTATTTGGAGATAATAAGGAAAATGGCAGAGAAAGTGATGCACAAGAAGATTTTCCTGAAGTTAAACTAGAATTTCAGGAGACATTTTTGGGCCACACTAGTCCAATTAGTCGTTGCCGCTTCTCTGCAACTGGGGACAATATAGCAAGTGCTTCTCTGGATGGCACAGTCAGGATATGGACTTATGACTCCTCTACTTCAGCTTCCAGAAATGCGACCATTTACTGTGGAGCAGAAATCATGTCATTGGACTGGGAATGCAAGTCAAATCGTTTGCTTCTCATTGGCACTTCTAATGCTGGCATCAAAGCATGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTGAACACATCCGAAATATTTCCAAGTGTATTGGATATCAAGTGCAGCCCTGTTGAGCCAATATTTGTATCTGCAGCAGCATCCAGAGGAGAAGGTGTGAGCTATATTGATAGTTTAGGATATGCTTCACTAACAGTGTGGAACATGAAGACATGGAAGCCTATGACAGTACTTCCGCTTGGAAAGGATCCTCCTGCAATCACGTCTTTATGCTTCAATCACAATGGAAAGATTTTAGCTGCCTCTGCCACTGATGGAATGATTCACATGTTTGATATGTCTGCTTGTCTACAAATCACTGGATGGCCTGCACATGATTCTGCTATAAACTCGATTCTTTTCGGACCAGATGAGACGAGCATTTTCACCTTCGGGGTAGATGGAAAGGCAAGTGCTCTATCTATTTTTGAATGGAGCTTGCAAAACCAGGGCCAAGTCCTTTGGTCCCGAAATTGTGGCAGGTATTGTGACCCTGAGAGCACAGTGCTTTTGAGACATGAAATGGCTTTAGACCCTCATGGGAAGAGGCTCTTAGCCACGTCTGGTTCTGTGAGAGCACCCATTTATCAGGTTCGAGGCAGGAATAGTGGGCTAAGAACTCTGCCACACACTGCAGCCATAACAACAGTTGATTGGCACCCAACGCTGCCTGTTTTCTTAACCGGCTCAGCCGATAACTCGGTCCGAGTCTCATCTCTGCTTTAA 1494 43.51 MENMLYAEELVREFLIFRGFSGTLQAFEAELTTDIGKAIPYLKNPSLDPDFRVYFSKEWHESLRVSVRNFFSKVSSGVQHEENILRSTDNLEACSHASLQSRETELLDRAVSQPAEIHPDLMTSNTCHVSSSSQKLDLEDEDIGSASYVFGDNKENGRESDAQEDFPEVKLEFQETFLGHTSPISRCRFSATGDNIASASLDGTVRIWTYDSSTSASRNATIYCGAEIMSLDWECKSNRLLLIGTSNAGIKAWNVDAKRVVCDLNTSEIFPSVLDIKCSPVEPIFVSAAASRGEGVSYIDSLGYASLTVWNMKTWKPMTVLPLGKDPPAITSLCFNHNGKILAASATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTFGVDGKASALSIFEWSLQNQGQVLWSRNCGRYCDPESTVLLRHEMALDPHGKRLLATSGSVRAPIYQVRGRNSGLRTLPHTAAITTVDWHPTLPVFLTGSADNSVRVSSLL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5222975 5227659 + Bda020715.2 Bda05g00106 6418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00106 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Bda05g00106 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 463 497 IPR001680 GO:0005515
Bda05g00106 497 PANTHER OS05G0299300 PROTEIN 1 496 - -
Bda05g00106 497 Pfam WD domain, G-beta repeat 461 493 IPR001680 GO:0005515
Bda05g00106 497 Pfam WD domain, G-beta repeat 174 208 IPR001680 GO:0005515
Bda05g00106 497 Pfam WD domain, G-beta repeat 327 355 IPR001680 GO:0005515
Bda05g00106 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 463 497 - -
Bda05g00106 497 SUPERFAMILY WD40 repeat-like 145 493 IPR036322 GO:0005515
Bda05g00106 497 Gene3D - 429 496 IPR015943 GO:0005515
Bda05g00106 497 Gene3D - 72 293 IPR015943 GO:0005515
Bda05g00106 497 Gene3D - 301 424 IPR015943 GO:0005515
Bda05g00106 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 212 - -
Bda05g00106 497 SMART WD40_4 356 400 IPR001680 GO:0005515
Bda05g00106 497 SMART WD40_4 215 254 IPR001680 GO:0005515
Bda05g00106 497 SMART WD40_4 314 355 IPR001680 GO:0005515
Bda05g00106 497 SMART WD40_4 170 209 IPR001680 GO:0005515
Bda05g00106 497 SMART WD40_4 457 495 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00106 K24760 WDR91; WD repeat-containing protein 91 - csv:101209643 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00106 Bda-Chr5:5222975 Bda07g01678 Bda-Chr7:31112736 1.60E-08 dispersed
Bda05g00106 Bda-Chr5:5222975 Bda04g00146 Bda-Chr4:3969533 4.79E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00106 Bda_Chr05 FPKM 39.102303 40.252941 59.878216 64.953239 23.628828 21.086107 23.892574 35.206478 33.594269