Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00107 ATGGCGTCGAAGCGGATCTTGAAGGAACTTAAGGATTTGCAAAAGGATCCTCCTACATCTTGCAGCGCTGGTCCTGTAGCAGAGGACATGTTCCACTGGCAAGCCACCATAATGGGTCCTCCAGATAGTCCTTATGCCGGTGGTGTTTTCCTAGTCACTATCCATTTTCCTCCGGATTATCCCTTTAAGCCTCCCAAGGTGGCTTTTAGGACAAAGGTTTTTCATCCTAATATAAACAGCAATGGAAGTATTTGCCTTGACATACTGAAAGAGCAGTGGAGCCCTGCCCTAACTATCTCCAAGGTGTTGCTTTCAATTTGTTCTCTGTTGACGGACCCAAATCCCGACGATCCCTTGGTTCCTGAGATAGCTCACATGTACAAGACCGACAGGAGTAAGTACGAGACAACTGCAAGGGGTTGGACCCAGAAGTATGCCATGGGTTAA 447 47.43 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARGWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5269163 5276140 + Bda020717.1 Bda05g00107 6419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00107 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Bda05g00107 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Bda05g00107 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Bda05g00107 148 SMART ubc_7 4 147 - -
Bda05g00107 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Bda05g00107 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Bda05g00107 148 Pfam Ubiquitin-conjugating enzyme 5 139 IPR000608 -
Bda05g00107 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Bda05g00107 148 CDD UBCc 3 142 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00107 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - fve:101298827 311.997
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00107 Bda15g00771 CCT
Bda05g00107 Bda15g00771 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00514 Bda-Chr1:32108533 Bda05g00107 Bda-Chr5:5269163 4.57E-22 dispersed
Bda05g00107 Bda-Chr5:5269163 Bda07g01918 Bda-Chr7:36640752 1.90E-109 dispersed
Bda08g00317 Bda-Chr8:3286975 Bda05g00107 Bda-Chr5:5269163 9.89E-17 dispersed
Bda11g01849 Bda-Chr11:53670889 Bda05g00107 Bda-Chr5:5269163 5.95E-14 dispersed
Bda13g00218 Bda-Chr13:2785836 Bda05g00107 Bda-Chr5:5269163 2.99E-15 dispersed
Bda11g00225 Bda-Chr11:2751790 Bda05g00107 Bda-Chr5:5269163 4.53E-109 wgd
Bda15g00771 Bda-Chr15:11541146 Bda05g00107 Bda-Chr5:5269163 5.70E-109 wgd
Bda05g00107 Bda-Chr5:5269163 Bda06g00773 Bda-Chr6:10725771 5.70E-109 wgd
Bda05g00107 Bda-Chr5:5269163 Bda07g01917 Bda-Chr7:36617496 3.64E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00107 Bda_Chr05 FPKM 279.803345 293.483398 91.881454 80.384338 375.13974 274.56311 320.505066 13.681293 13.309324