Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00108 ATGAAGAGAGAAGTTTTTTGCCCGATCAAGTACAGTGAGCGCCGGAACTTTACGAAGAAATTCGTCGCCAAACAGTCAAACAAATCGGTGGAAGCTGTACCGAAACTCGTACGGATATCCGTCACTGACCCGGACGCTACAGATTCCTCCGGCGACGAAGAGGAGGAAGTGTTTTTTGATCGGCGGAGAGTGAAACGTTACGTTGACGAGATCAAAATCGAAGCCAGTTGCAAAATCACTGCTGCTCCAGTTTGTCGGAAAAGGCCTGCCGGGGAAACTCACTGCTTCCGGAGATCTCTGAAAGTATCTCCTGCGAACGGCAAAAAGTTTCGCGGCGTTCGACAGCGGCCGTGGGGAAAATGGGCGGCGGAGATCAGGGATCCAGCTCGCCGCGTACGGCTGTGGCTCGGCACCTTTGATACGGCGGAGGAGGCAGCGATGGTCTACGACAATGCGGCGATTAAGCTCCGGGGACCGGATGCTTTAACGAATTTCACTACTGCGCCACCGAGACAAACTTCCGAGACGAACGTTTCCTCCATTTCCGGTACTGGTTCTGGTTATGGGTACGATTCCGACGGAGTGTCTCATAACTTATCTTCTCCGATTTCGGTTCTTCAATTCAGAACTCAGTCAAACGACCACCAATCGAACCCTCAACAGCAACCCGAAAAACCGCTTCATCTACCCGAAATCTGCAAAATCTCATCCGCCAACCAGACTTCTACCGAGTCTCATGGAGATACAAGCTTCTCCGACGATTCAGGAGATTTTTTACCGTTCAACTCATCTTACTTCACCGATATATTCGATTTCCCGTTCCCCCAGTCCCCTACACTTTTCGATTCCCCGCTCCTTTTCGACGAGATATCAACTGGGTTACCGGAAAACAGACAGAATAATTATCTCACCGAGATATTTTCCGATATAAATGCAAATTTCGGGTTGCCGGAGGAAGGAGATGACTATTTCCAAGACATTTTGTTTGGGTCAGACCCATTAGTGGTCCTATGA 1014 49.61 MKREVFCPIKYSERRNFTKKFVAKQSNKSVEAVPKLVRISVTDPDATDSSGDEEEEVFFDRRRVKRYVDEIKIEASCKITAAPVCRKRPAGETHCFRRSLKVSPANGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFTTAPPRQTSETNVSSISGTGSGYGYDSDGVSHNLSSPISVLQFRTQSNDHQSNPQQQPEKPLHLPEICKISSANQTSTESHGDTSFSDDSGDFLPFNSSYFTDIFDFPFPQSPTLFDSPLLFDEISTGLPENRQNNYLTEIFSDINANFGLPEEGDDYFQDILFGSDPLVVL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5297588 5298601 + Bda020718.1 Bda05g00108 6420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00108 337 MobiDBLite consensus disorder prediction 165 185 - -
Bda05g00108 337 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 18 219 - -
Bda05g00108 337 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Bda05g00108 337 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Bda05g00108 337 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 219 - -
Bda05g00108 337 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00108 Bda-Chr5:5297588 Bda09g00020 Bda-Chr9:329903 2.96E-66 dispersed
Bda15g00648 Bda-Chr15:9934103 Bda05g00108 Bda-Chr5:5297588 5.27E-23 dispersed
Bda11g00224 Bda-Chr11:2749556 Bda05g00108 Bda-Chr5:5297588 8.24E-47 wgd
Bda15g00772 Bda-Chr15:11547126 Bda05g00108 Bda-Chr5:5297588 2.31E-95 wgd
Bda05g00108 Bda-Chr5:5297588 Bda06g00774 Bda-Chr6:10729812 7.45E-93 wgd
Bda05g00108 Bda-Chr5:5297588 Bda07g01919 Bda-Chr7:36646610 6.97E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15860 PF00847 AP2 6.60E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00108 - - mnt:21394722 306.605