Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g00108 | ATGAAGAGAGAAGTTTTTTGCCCGATCAAGTACAGTGAGCGCCGGAACTTTACGAAGAAATTCGTCGCCAAACAGTCAAACAAATCGGTGGAAGCTGTACCGAAACTCGTACGGATATCCGTCACTGACCCGGACGCTACAGATTCCTCCGGCGACGAAGAGGAGGAAGTGTTTTTTGATCGGCGGAGAGTGAAACGTTACGTTGACGAGATCAAAATCGAAGCCAGTTGCAAAATCACTGCTGCTCCAGTTTGTCGGAAAAGGCCTGCCGGGGAAACTCACTGCTTCCGGAGATCTCTGAAAGTATCTCCTGCGAACGGCAAAAAGTTTCGCGGCGTTCGACAGCGGCCGTGGGGAAAATGGGCGGCGGAGATCAGGGATCCAGCTCGCCGCGTACGGCTGTGGCTCGGCACCTTTGATACGGCGGAGGAGGCAGCGATGGTCTACGACAATGCGGCGATTAAGCTCCGGGGACCGGATGCTTTAACGAATTTCACTACTGCGCCACCGAGACAAACTTCCGAGACGAACGTTTCCTCCATTTCCGGTACTGGTTCTGGTTATGGGTACGATTCCGACGGAGTGTCTCATAACTTATCTTCTCCGATTTCGGTTCTTCAATTCAGAACTCAGTCAAACGACCACCAATCGAACCCTCAACAGCAACCCGAAAAACCGCTTCATCTACCCGAAATCTGCAAAATCTCATCCGCCAACCAGACTTCTACCGAGTCTCATGGAGATACAAGCTTCTCCGACGATTCAGGAGATTTTTTACCGTTCAACTCATCTTACTTCACCGATATATTCGATTTCCCGTTCCCCCAGTCCCCTACACTTTTCGATTCCCCGCTCCTTTTCGACGAGATATCAACTGGGTTACCGGAAAACAGACAGAATAATTATCTCACCGAGATATTTTCCGATATAAATGCAAATTTCGGGTTGCCGGAGGAAGGAGATGACTATTTCCAAGACATTTTGTTTGGGTCAGACCCATTAGTGGTCCTATGA | 1014 | 49.61 | MKREVFCPIKYSERRNFTKKFVAKQSNKSVEAVPKLVRISVTDPDATDSSGDEEEEVFFDRRRVKRYVDEIKIEASCKITAAPVCRKRPAGETHCFRRSLKVSPANGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFTTAPPRQTSETNVSSISGTGSGYGYDSDGVSHNLSSPISVLQFRTQSNDHQSNPQQQPEKPLHLPEICKISSANQTSTESHGDTSFSDDSGDFLPFNSSYFTDIFDFPFPQSPTLFDSPLLFDEISTGLPENRQNNYLTEIFSDINANFGLPEEGDDYFQDILFGSDPLVVL | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5297588 | 5298601 | + | Bda020718.1 | Bda05g00108 | 6420 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g00108 | 337 | MobiDBLite | consensus disorder prediction | 165 | 185 | - | - | |
Bda05g00108 | 337 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE | 18 | 219 | - | - | |
Bda05g00108 | 337 | CDD | AP2 | 108 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | SMART | rav1_2 | 109 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | ProSiteProfiles | AP2/ERF domain profile. | 109 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | Pfam | AP2 domain | 109 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | Gene3D | AP2/ERF domain | 108 | 167 | IPR036955 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | PRINTS | Ethylene responsive element binding protein signature | 132 | 148 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | PRINTS | Ethylene responsive element binding protein signature | 110 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00108 | 337 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 18 | 219 | - | - | |
Bda05g00108 | 337 | SUPERFAMILY | DNA-binding domain | 109 | 166 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda05g00108 | Bda-Chr5:5297588 | Bda09g00020 | Bda-Chr9:329903 | 2.96E-66 | dispersed | |
Bda15g00648 | Bda-Chr15:9934103 | Bda05g00108 | Bda-Chr5:5297588 | 5.27E-23 | dispersed | |
Bda11g00224 | Bda-Chr11:2749556 | Bda05g00108 | Bda-Chr5:5297588 | 8.24E-47 | wgd | |
Bda15g00772 | Bda-Chr15:11547126 | Bda05g00108 | Bda-Chr5:5297588 | 2.31E-95 | wgd | |
Bda05g00108 | Bda-Chr5:5297588 | Bda06g00774 | Bda-Chr6:10729812 | 7.45E-93 | wgd | |
Bda05g00108 | Bda-Chr5:5297588 | Bda07g01919 | Bda-Chr7:36646610 | 6.97E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15860 | PF00847 | AP2 | 6.60E-14 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g00108 | - | - | mnt:21394722 | 306.605 |