Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00110 ATGGTGGGCAGTTCATCGTATAATTTCATAGAACAAGAGACGAGTTACGGCATGAATTTAACACCAGATGATGATCTTCTAAGTTTTTTTCAAAGCTTAGAAGATGTCGGAGAATTTCCCATTATAGACGACGAAGCCATCGCCATTCGTGCTAGTTTTAAGGAATTTGAAGGAACAGCGTGGAGATCATATCATCGAAACGCATCGTCTGCCATTACTGTGCAGCAGGTCAGTTTAGAGAGAGAAACTGAGCTTGAAATCTCGCTAGAAAGAAAGAGGTGGATCTTGAAACACAGCCGAGAAAATCAGCCTTCTTTTTCTAGGGAAACAAACACAAATGGAGGTCAAAAGAGGTCCCATATAGCAGTGGAGAGGAACAGACGAAAACAGATGAACGATCATTTGTCTGTGTTGAAGTCTCTTCTGCCTTCTTTCTATGTCCAGAAGGGAGATCAAGCTTCTATTGTTGGAGGTGTAGTGAGTTACATCAACGAGTTGGAGCAAATTTTAAAAACTCTAGAGGGGAAGAAGAAGAGAAAGATTTGCAGTAAAGACAGTTTCTTAAACCCTAGTTCTAGAGCCTCGCCAATGCTAAGTCCTAGGACCCCACAAAAGAACAGTAGCTCATATCAGCTGCCATGGCTGCACAAAGCTCCATGCTATGTCTTTTCCGATCCTTCCAATCTGGCTAATTCAGTCGACCCATCTCCTTCTTCTTCCTCCTCTACCAGTTCTTCATTTGTTGATGGCTGCAATGAGCTTTTCGCTGCTACCTCTAAGTCTGCTCTGGCTGAAGTTGAAGTGAGATTTACAGGTCCTAATTTGCTTTTGAGGACTGTTTCTTCTTCTCGTTTTCCTGGTCAAGTTTTGAAAATAATGGCTGCCATTGAAGACCTCTCACTTGAAATTCTTCACTTGACCATCTCTACCAATGAAGACACTACGGTCAATACCTTCACCATTAAGATTGGAATTGAATGCAAAATTAGTGCTGAGGAACTGGCTTACAACATCCAGCATACATTCTGCTAA 1032 41.96 MVGSSSYNFIEQETSYGMNLTPDDDLLSFFQSLEDVGEFPIIDDEAIAIRASFKEFEGTAWRSYHRNASSAITVQQVSLERETELEISLERKRWILKHSRENQPSFSRETNTNGGQKRSHIAVERNRRKQMNDHLSVLKSLLPSFYVQKGDQASIVGGVVSYINELEQILKTLEGKKKRKICSKDSFLNPSSRASPMLSPRTPQKNSSSYQLPWLHKAPCYVFSDPSNLANSVDPSPSSSSSTSSSFVDGCNELFAATSKSALAEVEVRFTGPNLLLRTVSSSRFPGQVLKIMAAIEDLSLEILHLTISTNEDTTVNTFTIKIGIECKISAEELAYNIQHTFC 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5386189 5387709 + Bda020722.1 Bda05g00110 6422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00110 343 MobiDBLite consensus disorder prediction 105 119 - -
Bda05g00110 343 Pfam Helix-loop-helix DNA-binding domain 116 167 IPR011598 GO:0046983
Bda05g00110 343 MobiDBLite consensus disorder prediction 185 206 - -
Bda05g00110 343 Gene3D - 107 180 IPR036638 GO:0046983
Bda05g00110 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 182 IPR036638 GO:0046983
Bda05g00110 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 166 IPR011598 GO:0046983
Bda05g00110 343 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 7 343 - -
Bda05g00110 343 MobiDBLite consensus disorder prediction 100 120 - -
Bda05g00110 343 PANTHER TRANSCRIPTION FACTOR FAMA 7 343 IPR044283 GO:0003700|GO:0010052
Bda05g00110 343 SMART finulus 121 172 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00110 K20558 SPCH; transcription factor SPEECHLESS - rcu:8274388 261.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00110 Bda15g00775 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00110 Bda-Chr5:5386189 Bda13g00490 Bda-Chr13:5769953 1.11E-43 dispersed
Bda11g00562 Bda-Chr11:5822685 Bda05g00110 Bda-Chr5:5386189 1.23E-52 transposed
Bda15g00775 Bda-Chr15:11598979 Bda05g00110 Bda-Chr5:5386189 3.74E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016607 1 0 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15861 PF00010 HLH 2.90E-11 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00110 Bda_Chr05 FPKM 4.181545 4.192364 19.125793 18.873716 7.000673 7.826947 6.956237 0.713223 0.796325