Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00116 ATGATCTATGCTGTTCTTATCCTCTTCCATCTCCATTGCTGTCCTGTTTCTTCTTCTCCTCAATCTGAGCTTGGTGTGTGGGCAGTGGTAAAGAAGTACCTGTTTTCCAATTTTCTGATTGATGTTCTTTCTGCTCTTCCACTCCCACAGGTGATATTTCTACTAGCTATTCCAAAGTTATGGAGCTCTTCACTTTGGATTGCACTGAGGTCATTGAAATTTATCCTTTTGTTCCAATTTGTGCCACGGGTTCTTCGAATCTATGCATTTCTAAGGAAAGTTACATGGACTGCTGGTATATTTTTTCCTGAAAGTCCAGGGGGTAGAGCTGTACTTAATCTCTTTCTTTACATGCTTGCAAGCCATGTTTTTGGAGCCTTTTGGTACTTGTTTTCGATTGAACGAAAAATTTCATGCTGGCAAGGCACTTGTGTCAAGCACACTGCTCAATCTTGCTCTTTAAATTGCGATAGAAACTCGACAAACACTTCACTCCTGAATGGTATTTGTGTCGATTATTCACGAAATAGTTTTGGAATTTTTGCTGCTGCCTTTGAATCTGGCGTGGTTAATTCTAGAGAGTTTGTCAAGAAGATATCTTTTTGCTACTGGTGGGGACTTCGGAATCTAAGTTCACTTGGTCAAAACCTAAAAACAAGCACATTCATATGGGAAATATACTTTGCTGCCTTAATATCGACTTTCGGCTTACTTTTATTCGCCTTTCTAATTGGAAATTTGCAGACATACCTTAGGAGCAGCATTGCAAGGCTAGAGGAAATGAGAGTTAAAGGAGAGGACATTGAACTATGGTTGGCTTTTCATTCTCTTCCAAGAAATTTGAAAACTCAGATAAAAAAATACGAAAAATTCAAATGGCGTAGCACAAAAGGTATCGACATCGAGAGTCTACTTGTTGATCTCCCGAGAGATCTTCGAAGAGAGACAAAGCGACATCTCTGCGAAATTTCGATCACAAGCGTGCCAATTCTCCGAAACATGGATCAAAAGTTAATTGATGCAATTTACGATCATCTCAAACCGACATTATATATTGAGCACACGTTCATTGTACGAGAAGGCGAGCCGTTGGATGAGATAATATTCATAATACGAGGCCAAATACGGACTTACAGTGCCGGCATGGGAAATTCAACCGAGTACTTAACAAAAGGCCAGTTTTATGGGGAAGATCTTCTAGATTGGGCACTATCTACACCATTTGCGGTTAGTAGTGTCTCTGCCTCTACAAAAACGGTAACAGCACATACAAAGACAGAGGCCTTTGTTTTGAGAGCACATGACCTTAAAATTCTGGTTTCTAAATTTTGGTGGCTTTTTAGTAGAGAGTTAGGACACTGCCCTAAATTTAGACAGAACTGGGCTCCTTTTGCTGCCCTTATTTTACAGTCAGCTTGGCGGCGGTACTGCATAAATAAGGTAATGCTGACAAACCAGACGGATAAAGAAGGGGATTATTCATCCAGTTCGAGGCCCGCAGTTAAGATGTTTGGGCTCGTGGGTAAAGTCATGGGGAACCTAAGGCAGAAGAAAGCTAACAGGGGTTCTTCGGAGTCGAGCTAA 1584 40.97 MIYAVLILFHLHCCPVSSSPQSELGVWAVVKKYLFSNFLIDVLSALPLPQVIFLLAIPKLWSSSLWIALRSLKFILLFQFVPRVLRIYAFLRKVTWTAGIFFPESPGGRAVLNLFLYMLASHVFGAFWYLFSIERKISCWQGTCVKHTAQSCSLNCDRNSTNTSLLNGICVDYSRNSFGIFAAAFESGVVNSREFVKKISFCYWWGLRNLSSLGQNLKTSTFIWEIYFAALISTFGLLLFAFLIGNLQTYLRSSIARLEEMRVKGEDIELWLAFHSLPRNLKTQIKKYEKFKWRSTKGIDIESLLVDLPRDLRRETKRHLCEISITSVPILRNMDQKLIDAIYDHLKPTLYIEHTFIVREGEPLDEIIFIIRGQIRTYSAGMGNSTEYLTKGQFYGEDLLDWALSTPFAVSSVSASTKTVTAHTKTEAFVLRAHDLKILVSKFWWLFSRELGHCPKFRQNWAPFAALILQSAWRRYCINKVMLTNQTDKEGDYSSSSRPAVKMFGLVGKVMGNLRQKKANRGSSESS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5709074 5712130 + Bda020732.1 Bda05g00116 6428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00116 527 ProSiteProfiles cAMP/cGMP binding motif profile. 330 416 IPR000595 -
Bda05g00116 527 SUPERFAMILY Voltage-gated potassium channels 29 252 - -
Bda05g00116 527 Gene3D Helix hairpin bin 256 321 - -
Bda05g00116 527 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 512 - -
Bda05g00116 527 SMART cnmp_10 330 455 IPR000595 -
Bda05g00116 527 CDD CAP_ED 330 436 IPR000595 -
Bda05g00116 527 Pfam Ion transport protein 2 251 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda05g00116 527 Gene3D Jelly Rolls 328 444 IPR014710 -
Bda05g00116 527 Gene3D - 1 253 - -
Bda05g00116 527 SUPERFAMILY cAMP-binding domain-like 260 444 IPR018490 -
Bda05g00116 527 PANTHER CYCLIC NUCLEOTIDE-GATED CHANNEL 21 2 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00116 K05391 CNGC; cyclic nucleotide gated channel, plant - csv:101212985 525.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00116 Bda15g00779 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00116 Bda-Chr5:5709074 Bda05g00152 Bda-Chr5:6374711 0 dispersed
Bda05g00113 Bda-Chr5:5661048 Bda05g00116 Bda-Chr5:5709074 4.80E-140 proximal
Bda05g00115 Bda-Chr5:5688227 Bda05g00116 Bda-Chr5:5709074 3.62E-64 tandem
Bda05g00116 Bda-Chr5:5709074 Bda05g00117 Bda-Chr5:5715619 1.48E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g872 Blo06g01081 Blo15g00092 Bda05g00116 . . . . . . . . . Car02g00918 . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01078 . . . Bda15g00779 . Bpe12g00381 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000937 4 4 0 1 2 2 2 2 2 2 1 3 3 2 2 3 3 2 3 2 2 3 4 3 4 2 2 13 6 0 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00116 Bda_Chr05 FPKM 10.78157 10.836384 0.375954 0.297748 6.334245 5.776886 5.355354 0.0 0.0