Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00126 ATGGATCTCGATAGCATTGAGTGCGTGTCGGATGGTCTGGACGAGGATGAGATCCATCTGAACCGTACCCTTCATTCGCATCCTCATCCTCATCCTCATCCTCATCATCACCCTGAGTTTGGGGCGTCCAAACCTCGCAATGGCACTACCAATGGCGCTGTAGCTGTTCCGACTGCGACTGCTCCAGCCACCAGCGTCCATGAGTTGCTCGAATGCCCAGTCTGTACCAATTCTATGTACCCACCAATCCATCAGTGCCATAATGGGCACACCCTATGTTCGACATGTAAAACAAGAGTACACAACCGTTGCCCCACTTGTCGGCAAGAGTTGGGAGATATAAGGTGCTTGGCACTAGAAAAGGTGGCAGAGTCGCTTGAATTGCCGTGCAAGTACTACTCCTTGGGATGTCCAGAGATCTTCCCCTACTACAGCAAACTCAAGCACGAGGCAATGTGCAATTTCAGACCATACAATTGCCCTTATGCCGGATCGGAGTGCTCAGTCGTGGGGGATATTCCTTTTCTCGTTGCTCATTTGCGGGATGATCACAAAGTCGATATGCACACAGGCTGCACTTTTAACCATCGATATGTCAAGTCAAATCCTCGAGAAGTCGAGAATGCTACTTGGATGCTCACTGTATTCCATTGTTTTGGGCAGTACTTCTGCCTCCATTTTGAAGCTTTCCAGCTCGGAATGGCACCTGTTTACATGGCATTTCTCCGCTTTATGGGCGATGAGAATGAGGCTCGAAGCTACAGCTACAGCCTCGAGGTTGGCGGGTATGCTCGGAAATTGATATGGGAGGGAAGTCCACGAAGCATTAGGGACAGCCATCGAAAGGTTAGGGATAGCCACGACGGGCTAATAATTCAAAGAAACATGGCGCTTTTCTTCTCCGGTGGGGATAGAAAGGAGCTGAAGCTGAGAGTTACAGGGAGGATATGGAAGGAGCAGAACCCAGATGCTGTTGTGTGCATACCAAACCTGTGTAGC 999 49.85 MDLDSIECVSDGLDEDEIHLNRTLHSHPHPHPHPHHHPEFGASKPRNGTTNGAVAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARSYSYSLEVGGYARKLIWEGSPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAVVCIPNLCS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5975431 5977111 - Bda033625 Bda05g00126 6438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00126 333 SUPERFAMILY RING/U-box 60 112 - -
Bda05g00126 333 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Bda05g00126 333 MobiDBLite consensus disorder prediction 23 51 - -
Bda05g00126 333 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bda05g00126 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 325 - -
Bda05g00126 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 325 - -
Bda05g00126 333 CDD RING-HC_SIAHs 70 108 - -
Bda05g00126 333 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Bda05g00126 333 SUPERFAMILY TRAF domain-like 125 317 - -
Bda05g00126 333 CDD Sina 186 314 - -
Bda05g00126 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 178 IPR013083 -
Bda05g00126 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 179 313 IPR008974 GO:0005515
Bda05g00126 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 124 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00126 Bda06g00784 CCT
Bda05g00126 Bda06g00784 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01584 Bda-Chr3:55093329 Bda05g00126 Bda-Chr5:5975431 1.15E-161 dispersed
Bda05g00126 Bda-Chr5:5975431 Bda15g00095 Bda-Chr15:3204074 3.72E-169 dispersed
Bda11g00212 Bda-Chr11:2638936 Bda05g00126 Bda-Chr5:5975431 0 wgd
Bda05g00126 Bda-Chr5:5975431 Bda06g00784 Bda-Chr6:10882064 1.20E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00126 K04506 - csv:101215696 637.491