Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00130 ATGATGGATGCCATCAGTGACGAAAACAAATGCCGTTTTTTCGATGCGGTGGAGGATGTTACTTCAATATCTGATGGAAATTGTGATGGCAGAGGGATTTTTCATTACAATTCTAGCCTTAATGCTTGGTTTGAGGGTAGTTTCTCGTATGATGTTTGGAGGAGTCCCCAAAGCGTCGAAGAGCGACGCGTAAGGTTTTTACGATGGATGGGGCTGAGTTGGGATCAAATTGGTTTTGATAACTCAGAAGATTTATGTGGTGATGTGATGAAAGAACAACATGAAAGAGTTAGGGAGACCAATGGGGCTGTAGATGAGGTCTGTTCAACTGATAATTTCGACTCGGCCGAGGAGACAGATTCAGTTGAAACTTTTGTTAGTAAAGATGGGAGAATAATTGTTTCTGATGATGATAAAATGAAGCTGACTGGCAGGAGTGAAAGAAGGCCTAGTTCACCTTCCTCGGTTCATACGATGGAGACCGACCTTCGGAGGAGAAACAGTCTGGTGGATGCTCTGAAGAGCCGGAAGAAGAATTGGCTACATAGGTTGCGATCTTTAGCATGCGTGGCCGATGCACGGGGTGAAGATTTTGTGTCGAGATCAGACGGCCACGCACATCCGAGGCCTAAAAGAAGAGTTAAGGTCCACCATTTCAAGAAGCAGGCTAAGGAGCTTTCAGCTCTGTATATAGGGCAAGACATCCGTGCTCATGATGGTGCAATTTTGGCAATGAAGTTCAGCCCTGATGGGCAATATCTTGCAAGTGGAGGAGAGGATGGGACTGTTAGATTGTGGCAAGTAGTGGAGGATGAGATATCTAATGACACAGACATTCCAGAAATAGATCCATCTTGCATCTACTTCACAGTCAACCATCTATCTGAATTGAAGCCTCTAGTCGAGCATAAAGAGATCACGGGTTTCAGATTAACGAATCTGAAGAAGACATCGGAATCGGCTTGCATCATTTTCCCTCCTAAAGTTTTTCGAATAGTGGAAAAGCCGTTGCATGATTACCGCGAGCACAATGATGAGATCTCTGATCTATCATGGTCCAAGAATAATTATCTTCTCTCCTCATCAGTCGACAAAACGGTTCGCCTATGGCGAGTAGGATGTGATGATTGCATAAAAGTTTTCTCCCACAGTGATTATGTCACTTGCGTTCAATTTAATCCAGCGGATGATGATTACTTCATTAGCGGTTCGATAGACGGAAAAGTTCGCATTTGGAGAATTTCGACTTGTCAAGTTGCTGACTGGACTGATGTTAGAGATATCGTTACTGCAGTAGCTTATCGGCCTGACGGAGAGGGAGGAATTGCCGGCTCAATGGCCGGTGATTGTCGCTTCTACAACATCTCAGATAACCATATGCAGTTAGATGCTCAGTTATCCTTTCACGGCAAGAAGAAGTCTTCTGCTTCCAGGAAGATTACAGGCTTTCAGTTCTTTCCCCAAGATTCTAGCAGAGTGGTGGTGACCTCTGCTGATTCCCATGTCAGAATTCTTCATGGCTCTAATGTGGTAGGGGCATACAGGGGATTTCGCAATGCTGGAAACCAGATGTCGGCGTCTTTCACTGCCGATGGGAAGTATATTGTGTCGGCCTGTGGAGATTCTAATGTATATCTATGGAACTCGGGCCATAGTGGAAGAGGTCAGTCTCGCGCGGGAGAACATTAA 1689 45.0 MMDAISDENKCRFFDAVEDVTSISDGNCDGRGIFHYNSSLNAWFEGSFSYDVWRSPQSVEERRVRFLRWMGLSWDQIGFDNSEDLCGDVMKEQHERVRETNGAVDEVCSTDNFDSAEETDSVETFVSKDGRIIVSDDDKMKLTGRSERRPSSPSSVHTMETDLRRRNSLVDALKSRKKNWLHRLRSLACVADARGEDFVSRSDGHAHPRPKRRVKVHHFKKQAKELSALYIGQDIRAHDGAILAMKFSPDGQYLASGGEDGTVRLWQVVEDEISNDTDIPEIDPSCIYFTVNHLSELKPLVEHKEITGFRLTNLKKTSESACIIFPPKVFRIVEKPLHDYREHNDEISDLSWSKNNYLLSSSVDKTVRLWRVGCDDCIKVFSHSDYVTCVQFNPADDDYFISGSIDGKVRIWRISTCQVADWTDVRDIVTAVAYRPDGEGGIAGSMAGDCRFYNISDNHMQLDAQLSFHGKKKSSASRKITGFQFFPQDSSRVVVTSADSHVRILHGSNVVGAYRGFRNAGNQMSASFTADGKYIVSACGDSNVYLWNSGHSGRGQSRAGEH 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6011416 6013507 - Bda020748.1 Bda05g00130 6442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00130 562 MobiDBLite consensus disorder prediction 141 160 - -
Bda05g00130 562 Gene3D - 90 298 IPR015943 GO:0005515
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Bda05g00130 562 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 127 290 - -
Bda05g00130 562 SMART WD40_4 333 371 IPR001680 GO:0005515
Bda05g00130 562 SMART WD40_4 459 506 IPR001680 GO:0005515
Bda05g00130 562 SMART WD40_4 374 413 IPR001680 GO:0005515
Bda05g00130 562 SMART WD40_4 507 548 IPR001680 GO:0005515
Bda05g00130 562 SMART WD40_4 228 267 IPR001680 GO:0005515
Bda05g00130 562 SMART WD40_4 415 454 IPR001680 GO:0005515
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 525 548 IPR001680 GO:0005515
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 416 IPR001680 GO:0005515
Bda05g00130 562 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Bda05g00130 562 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Bda05g00130 562 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 380 416 - -
Bda05g00130 562 SUPERFAMILY WD40 repeat-like 235 549 IPR036322 GO:0005515
Bda05g00130 562 Gene3D - 303 560 IPR015943 GO:0005515
Bda05g00130 562 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 552 - -
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 268 - -
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 372 - -
Bda05g00130 562 Pfam WD domain, G-beta repeat 335 370 IPR001680 GO:0005515
Bda05g00130 562 Pfam WD domain, G-beta repeat 235 266 IPR001680 GO:0005515
Bda05g00130 562 Pfam WD domain, G-beta repeat 376 412 IPR001680 GO:0005515
Bda05g00130 562 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 372 IPR001680 GO:0005515
Bda05g00130 562 PANTHER WD REPEAT DOMAIN 44 5 552 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00130 - - - qsu:112008846 631.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00130 Bda06g00793 CCT
Bda05g00130 Bda15g00789 CCT
Bda05g00130 Bda06g00793 ECH
Bda05g00130 Bda15g00789 ECH
Bda05g00130 Bda07g01942 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00130 Bda-Chr5:6011416 Bda10g00359 Bda-Chr10:34511239 3.77E-107 dispersed
Bda15g00789 Bda-Chr15:11794083 Bda05g00130 Bda-Chr5:6011416 0 wgd
Bda05g00130 Bda-Chr5:6011416 Bda06g00793 Bda-Chr6:10998273 2.65E-174 wgd
Bda05g00130 Bda-Chr5:6011416 Bda07g01942 Bda-Chr7:36880142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00130 Bda_Chr05 FPKM 1.462963 1.439101 0.575736 0.55981 0.339979 0.4401 0.627565 0.0 0.253672