Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00134 ATGAACTATATTATTGGAGCTTTTAAGCCATCTTGTAACATCTCAATCACATTCTCTGACGGGAAAACTCGCAAGCAGGTTCCATTAAAGAAAGAAAATGGTCAAACAGTTATGGTCCCTCTTTTTCAAAGCCAAGAAAACATTAGTGGAAAGATATCCATAGAACCTGTTCAAGGGAAAAAGGTTGAACACAATGGTGTAAAAGTTGAGCTGCTTGGTCAGATAGAGATGTATTTTGATAAAAACAACTTTTATGACTTCACTTCTCTTGTTCGTGAACTTGACGTTCCTGGAGAAATATATGAGAAGAAATCATATCCATTCGAGTTTTCTACTGTGGAAATGCCATATGAGACATATAATGGTGTTAATGTAAGGCTTAGGTACGTGTTGAAAGTTACAGTCACTCGTCCTTATGCTGGTCTCATCGTGGAATATCAAGATTTTGTGGTTCGGAACTATACACCAACTCCATCAATTAACAATAGTATCAAGATGGAAGTTGGCATTGAAGATTGTCTTCATATTGAGTTTGAGTATAACAAAAGCAAGTATCATCTCAAAGATGTCATTATTGGAAAAATATACTTTCTTCTTGTAAGAATCAAGATAAAAAATATGGACTTGGAAATAAGACGCAGAGAATCGACTGGAGCAGGTGCCAACACGCACATCGAAACAGAGACGCTTGCTAAATTTGAATTGATGGATGGTGCTCCTGTTAGAGGTGAATCAATTCCAATCAGACTGTTTCTAAGCCCTTATGATCTGACTCCGACACACCGCAATATCAATAACAAATTCAGTGTCAAGTATTATTTGAATCTGGTACTAGTGGACGAAGAAGATCGACGCTATTTTAAGCAGCAGGAAATCACAATATACAGGCTTCAAGAGACGGCTTGA 906 37.2 MNYIIGAFKPSCNISITFSDGKTRKQVPLKKENGQTVMVPLFQSQENISGKISIEPVQGKKVEHNGVKVELLGQIEMYFDKNNFYDFTSLVRELDVPGEIYEKKSYPFEFSTVEMPYETYNGVNVRLRYVLKVTVTRPYAGLIVEYQDFVVRNYTPTPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGAGANTHIETETLAKFELMDGAPVRGESIPIRLFLSPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQETA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6157873 6160771 - Bda020759.1 Bda05g00134 6446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00134 301 Gene3D - 157 301 IPR014752 -
Bda05g00134 301 SUPERFAMILY E set domains 46 141 IPR014756 -
Bda05g00134 301 Gene3D - 1 155 IPR014752 -
Bda05g00134 301 PANTHER VACUOLAR PROTEIN SORTING 26A-RELATED 1 301 - -
Bda05g00134 301 Pfam Vacuolar protein sorting-associated protein 26 8 283 IPR028934 GO:0006886
Bda05g00134 301 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 1 301 IPR028934 GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00134 K18466 VPS26A_B; vacuolar protein sorting-associated protein 26A/B - twl:120004604 574.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00134 Bda07g01949 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00260 Bda-Chr10:26633428 Bda05g00134 Bda-Chr5:6157873 0 wgd
Bda05g00134 Bda-Chr5:6157873 Bda07g01949 Bda-Chr7:36924960 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g996 . . Bda05g00134 Bda07g01949 . . Bma10g01311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004794 3 2 1 1 0 1 2 1 1 1 1 1 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00134 Bda_Chr05 FPKM 6.521946 8.46034 5.859509 4.764296 11.499401 9.231248 10.011313 0.908365 0.569536