Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00138 ATGAAGAGACATCTGACCCCAGAGATTAGGAACATGTCATTTTTACTCTGTTTTCCAACCATGGCTGAAATCCAAACTCAGATAACTTTCTTGATGATTACCTCGCTCAATATGTATTTATATATAATCGGAGCCTATCAATCAGACTCATCACCCAAACTCGATTCCTTTTTTCCGCCCACAATAAAAGAAAGAATTTTCGAAGGGAAGAGATTTAAGTCCGACCCAGAATCTGAATTTATGGAGACAAGGGAGTTTTCTGCAACAGAAACGCACGACCCACGTCCACTTCCATCCGCGAGGATGAAGAACAAAAACAAGCAGAGGTTCAGTGATGAACAGATTCGGCTGCTAGAGTCCACGTTTGAATCAGAGACAAAGCTGGAGCCAAGGAAGAAGGTGGCGGTGGCCGGAGAGCTTGGACTGCACCCTCGCCAGGTAGCTATATGGTTTCAGAACAGAAGAGCGCGAGGGAAGTCTAAGCAGATAGAGCAGGACTTGAGGATTCTCAAAGCTAACTATGATAGTTTAGCCTCCCAATTCGAAATTCTAAAGGAAGAGAAGAAAGCTTTGCTCGTACAGCTGCAGAAGCTAAATGGCATGGTGGGCAAACCTCCTTGCGGTTCCTCCACAAATGAAGATCAACCTGACTCGAGGGCAAGACACAGCTTACAAGAAGAAACGGAGGAGGCAGAACTGGATCATCCATACGATTTTCAGAAGAGTGGCTTCAGAAAATGGATCGAGGACGAAGGATGTGAAATCGAAGCCATTGACCCAGATGAACATGAAGAGAAAAGCAAGTACAACACCTTCGTTGACGACGAAGGACGTCAGCTTTGGGGTACCCAACACTTAAACTCCTCAATGACATCGCCTTTATTCGACAACTCATGCTGCAGTTCTGAGTGGCTCCATTTCTGGACTTGA 930 45.38 MKRHLTPEIRNMSFLLCFPTMAEIQTQITFLMITSLNMYLYIIGAYQSDSSPKLDSFFPPTIKERIFEGKRFKSDPESEFMETREFSATETHDPRPLPSARMKNKNKQRFSDEQIRLLESTFESETKLEPRKKVAVAGELGLHPRQVAIWFQNRRARGKSKQIEQDLRILKANYDSLASQFEILKEEKKALLVQLQKLNGMVGKPPCGSSTNEDQPDSRARHSLQEETEEAELDHPYDFQKSGFRKWIEDEGCEIEAIDPDEHEEKSKYNTFVDDEGRQLWGTQHLNSSMTSPLFDNSCCSSEWLHFWT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6189449 6190444 - Bda020763.1 Bda05g00138 6450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00138 309 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Bda05g00138 309 Pfam Homeobox associated leucine zipper 161 201 IPR003106 GO:0006355|GO:0043565
Bda05g00138 309 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Bda05g00138 309 MobiDBLite consensus disorder prediction 215 232 - -
Bda05g00138 309 CDD homeodomain 105 162 IPR001356 GO:0003677
Bda05g00138 309 MobiDBLite consensus disorder prediction 75 108 - -
Bda05g00138 309 Coils Coil 153 201 - -
Bda05g00138 309 Gene3D - 99 168 - -
Bda05g00138 309 MobiDBLite consensus disorder prediction 202 232 - -
Bda05g00138 309 SMART HOX_1 103 165 IPR001356 GO:0003677
Bda05g00138 309 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 98 309 - -
Bda05g00138 309 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 98 309 IPR045224 GO:0003700
Bda05g00138 309 SUPERFAMILY Homeodomain-like 93 162 IPR009057 -
Bda05g00138 309 Pfam Homeodomain 105 159 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00138 K09338 HD-ZIP; homeobox-leucine zipper protein - nnu:104593490 169.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00138 Bda07g01954 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00138 Bda-Chr5:6189449 Bda10g00072 Bda-Chr10:1578941 1.23E-27 dispersed
Bda05g00138 Bda-Chr5:6189449 Bda07g01954 Bda-Chr7:36946040 2.72E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15866 PF00046 Homeodomain 3.60E-15 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00138 Bda_Chr05 FPKM 0.0 0.0 2.957331 3.069275 0.0 7.212371 2.967997 6.199074 5.952712