Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00141 ATGGCTGTTGCTGAGAATGCTGGAGGCAGAATCGGCTCGTCGAGTCAAAGTTTGGACAATTCTACAGTGACATCTAATTCAGCAACTGTTGAAAACCAAAAACCCAGAAACGATCCTGAGGTTTTGAGTCTAGAATCCAATTTCCATCTAAACGGTGGCGATCGGGGCCATCTCCAACAGATAGGCGTCGCAAATACTGTATCAGTCGGCCCCAACAACTACAAGGTTCCAATGGGTCAAATGCAAAATGGGTATGAAGCTAATGGGGTCAACAGCCCGCAGATTGTGGTAAGGTCTAATGGCAATAGCAACGGCGAGGATGGGAATAACAGTTTTAAGAGGGATATGAGGGATTTGGAGGAGCTGTTATCCAAGTTGAATCCCATGGCCGAGGAATTCGTACCTCCCTCCCTTGCCAAAAATCTCCATGGCTACCTAACTGATGGTGGGTTTGGATTTTCAAACAACTTGCTGCTGCAAACTAATTCTGGCAATGCCAATGGAAATATTAATCGGAGGAAGAAGAATGGCTTTAGCCAAGGGAGGCGTAGGATGAATTATAAAATGACTGCAGCACAACGAGATGAGATGACTAGGAGGACTGTATATGTATCTGATATTGATCAGCAGGTAAACTGTAATCTTCTGTGCAGTTTCTGTGATTACTTAGTCGTTGATTGTCGTATTTGCGGTGATCCTAACTCCATTCTCCATTTTGCCTTTATTGAGTTTACTGATGATGGTACTTCCACAAGCTTATATCCTGCAAATTGTGGATACGTTTCCTATATACCTTGTGATTTGACTCCTAGCATTCTCATAGAGGGTGCAAGGGCTGCTTTGAATCTGTCAGGAACTATGCTTGGTTATTACCCAGTGAGAGTGCTCCCTTCAAAAACTGCAATTGCACCTGTTAATCCAGAATTTTTGCCTAGGTCTGCAGATGAGCGTGAAATGTGTTCAAGGACTATCTATTGTACAAATATTGACAAGAAGGTGGTTACTCAGGCAGAAGTCAAACTTTTCTTTGAGTCATTGTGCGGGGAGGTTCAACGACTTAGGCTACTGGGAGACTACCATCACTCCACTCGAATAGCGTTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGTGGCGTGGTTTTGGGTGCACTCCCTATAAGGGTAAGCCCATCGAAGACTCCAGTCCGCCCTCGTTCTCCGCGCCCTCAAATGCACTGA 1236 44.66 MAVAENAGGRIGSSSQSLDNSTVTSNSATVENQKPRNDPEVLSLESNFHLNGGDRGHLQQIGVANTVSVGPNNYKVPMGQMQNGYEANGVNSPQIVVRSNGNSNGEDGNNSFKRDMRDLEELLSKLNPMAEEFVPPSLAKNLHGYLTDGGFGFSNNLLLQTNSGNANGNINRRKKNGFSQGRRRMNYKMTAAQRDEMTRRTVYVSDIDQQVNCNLLCSFCDYLVVDCRICGDPNSILHFAFIEFTDDGTSTSLYPANCGYVSYIPCDLTPSILIEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPEFLPRSADEREMCSRTIYCTNIDKKVVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGALPIRVSPSKTPVRPRSPRPQMH 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6216503 6219671 - Bda020767.2 Bda05g00141 6453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00141 411 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 270 - -
Bda05g00141 411 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 275 411 - -
Bda05g00141 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 387 IPR000504 GO:0003723
Bda05g00141 411 MobiDBLite consensus disorder prediction 1 41 - -
Bda05g00141 411 Pfam Ataxin-2 C-terminal region 123 137 IPR009818 -
Bda05g00141 411 CDD RRM2_CID8_like 318 400 IPR034825 -
Bda05g00141 411 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 270 - -
Bda05g00141 411 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 275 411 - -
Bda05g00141 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Bda05g00141 411 SUPERFAMILY RNA-binding domain, RBD 171 246 IPR035979 GO:0003676
Bda05g00141 411 MobiDBLite consensus disorder prediction 9 40 - -
Bda05g00141 411 Gene3D - 160 302 IPR012677 -
Bda05g00141 411 Gene3D - 307 406 IPR012677 -
Bda05g00141 411 SUPERFAMILY RNA-binding domain, RBD 312 406 IPR035979 GO:0003676
Bda05g00141 411 SMART rrm1_1 323 395 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00141 - - - mcha:111011617 510.375
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00141 Bda07g01957 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00141 Bda-Chr5:6216503 Bda12g00790 Bda-Chr12:36876520 3.69E-107 dispersed
Bda05g00141 Bda-Chr5:6216503 Bda07g01957 Bda-Chr7:36952438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00141 Bda_Chr05 FPKM 21.903103 25.032507 8.245007 11.148694 7.97907 7.267438 7.223892 16.064161 15.59626