Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00142 ATGAGTGGCCGCTTTTCCCGTACTATCTATGTTGGAAACCTTCCCTCAGACATAAAGGAGCATGAAGTTGAAGATTTATTCTACAAGTATGGTCGCATAGTGGATATTGAGTTGAAGATCCCACCTCATCCTCCATGTTATTGCTTTGTTGAGTTTGAGAATGCTCGAGATGCTGAGGATGCAATTAGGGGTCGCGATGGATATAACTTTGACAAATGCCGTCTAAGGGTTGAACTCGCCCATGGTGGTCGAGGGCCCTCTTCAAGTGATCGTCGTAGTAGCTATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGAGGAGGCCGATTTGGTGTTTCACGCCATTCAGAATATCGAGTGATTGTTCGTGGGCTTCCTTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGAAAGGCTGGAGATGTCTGTTTCGCTGATATCTCCCGTGACAGTGAAGGGACTTTTGGAATTGTTGATTATACTAATTATGATGACATGAAATACGCCATAAGGAAACTTGATGACACTGAATTCAGAAATCCTTGGGCAAGATCATATATTCGGGTGAAGAAACATGAGGCAAGTCTATCAAGGAGCCGGAGCCGAAGTCGCAGCAGAAGCAGAAGTGCGAAAAGAAACCGGAGTAAATCAGTGGACCGATCTGTTTCTAGATCTGCATCAAGATCCAGATCTCCATCTCCAGCCAAAGCTTCCAAAGCGCGGTCAAAATCAAGGTCAAGATCACCGCGCCACCAGGTATGGAGGAAAGCTGGGTTGAACATTATCTATCCGTCATGTTTGTAG 831 46.81 MSGRFSRTIYVGNLPSDIKEHEVEDLFYKYGRIVDIELKIPPHPPCYCFVEFENARDAEDAIRGRDGYNFDKCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFADISRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVKKHEASLSRSRSRSRSRSRSAKRNRSKSVDRSVSRSASRSRSPSPAKASKARSKSRSRSPRHQVWRKAGLNIIYPSCL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6221925 6224096 + Bda020768.2 Bda05g00142 6454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00142 276 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bda05g00142 276 SMART rrm1_1 126 199 IPR000504 GO:0003723
Bda05g00142 276 Gene3D - 124 202 IPR012677 -
Bda05g00142 276 CDD RRM2_SF2_plant_like 125 200 - -
Bda05g00142 276 CDD RRM1_SF2_plant_like 8 79 - -
Bda05g00142 276 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 260 - -
Bda05g00142 276 MobiDBLite consensus disorder prediction 202 262 - -
Bda05g00142 276 MobiDBLite consensus disorder prediction 233 248 - -
Bda05g00142 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Bda05g00142 276 SUPERFAMILY RNA-binding domain, RBD 6 193 IPR035979 GO:0003676
Bda05g00142 276 MobiDBLite consensus disorder prediction 81 116 - -
Bda05g00142 276 Gene3D - 2 122 IPR012677 -
Bda05g00142 276 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 260 - -
Bda05g00142 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bda05g00142 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 189 IPR000504 GO:0003723
Bda05g00142 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00142 K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1 - mnt:21386798 335.109
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00613 Bda-Chr4:54771202 Bda05g00142 Bda-Chr5:6221925 4.08E-91 dispersed
Bda05g00142 Bda-Chr5:6221925 Bda14g00098 Bda-Chr14:697613 2.76E-11 dispersed
Bda13g01524 Bda-Chr13:38290998 Bda05g00142 Bda-Chr5:6221925 1.23E-07 dispersed
Bda05g00142 Bda-Chr5:6221925 Bda10g00623 Bda-Chr10:40276119 3.20E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00142 Bda_Chr05 FPKM 111.319695 115.281319 29.474243 27.008089 94.606247 94.593178 87.992386 30.274155 30.516382