Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00143 ATGTCTCAGGTCTTCATCTCCTCTCCCAAACATTGCGCCAAGCGAGGGTTCCACGTCGACAACCTCTTCAAAAAGATCTTCTGCTTATTTTCCGGAGCCTTCACCTTAATTCTCTCCCTCATATTACTTGTCTGGCTCATCTTAAGGCCAACGAAGCCTGAGTTCTCCCTCAAAGAGGCTGACGTTTACCAGCTCAATCTCTCGGCCCCTCATCTTCTCGATTCCTCCATCCAGTTCACTTTGCTTTCAAAGAACCCAAACCAGAAAGTTGGCATTTACTATGACGAGCTTCGTGTCTATGCCGCTTACAAGGGCGAAAGGATCACCCTCGCCACCTCCGTTCCTCCTTTCTACCAAGGCCACCAAGACAGAAATATGTTATCTGCTTCATTGGTTGGAGCAGGGGTGCCTGTATCTCCATCTTTTGGCTATGAAGTGGGGCGTGCTCAGACTGCCGGAACCCTTGTTTTGAACCTCAAAGTTGACGGGAGGCTTCGTTGGAAGGTCGGGACTTGGGTGTCAGGGCGTTACCGATTTGACGTCGACTGTGCTGCAGCTTTGCCCTTTGGACCAGCTTTTCCAACAGGACCTCTTTCTTCCAAGCAGGGAACCCAATGTTCCACTGCCGTTTGA 633 50.39 MSQVFISSPKHCAKRGFHVDNLFKKIFCLFSGAFTLILSLILLVWLILRPTKPEFSLKEADVYQLNLSAPHLLDSSIQFTLLSKNPNQKVGIYYDELRVYAAYKGERITLATSVPPFYQGHQDRNMLSASLVGAGVPVSPSFGYEVGRAQTAGTLVLNLKVDGRLRWKVGTWVSGRYRFDVDCAAALPFGPAFPTGPLSSKQGTQCSTAV 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6231346 6231978 + Bda020769.1 Bda05g00143 6455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00143 210 Pfam Late embryogenesis abundant protein 80 183 IPR004864 -
Bda05g00143 210 PANTHER NDR1/HIN1-LIKE PROTEIN 26 24 209 - -
Bda05g00143 210 PANTHER OS05G0367900 PROTEIN 24 209 IPR044839 GO:0098542
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00143 - - - mnt:21386786 327.791
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00143 Bda07g01959 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00665 Bda-Chr3:5658324 Bda05g00143 Bda-Chr5:6231346 5.45E-55 dispersed
Bda05g00143 Bda-Chr5:6231346 Bda13g00548 Bda-Chr13:6462751 1.13E-31 dispersed
Bda15g00459 Bda-Chr15:7688323 Bda05g00143 Bda-Chr5:6231346 6.42E-11 dispersed
Bda14g01546 Bda-Chr14:26995545 Bda05g00143 Bda-Chr5:6231346 1.16E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011546 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 0 1 1 3 1 0 1 0 1 3 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00143 Bda_Chr05 FPKM 1.963311 1.802474 0.0 0.0 0.0 0.0 0.324527 0.0 0.0