Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00144 ATGGCCATATCTTCTTCTTCCCCCGCCCGCACCCACCACCCCATAGCTCTCGGCAGCTTCATCGAAGACTATCCCAACCGCGTTGACGTCGTCTTCTTCGATCCCGACTCCCTCTCCCTCACCACCAACCCCTCCCTCTCCTTCGACCACCCCTATCCCCCCACCAAGCTCATGTTCCACCCCTCCCCCTCCTCCGACCTCCTCGTCTCCTCCGGCGACTTTCTTCGCCTCTGGGACCTTCGCGACTCTTCCATCGAGCCCCTCTCCGTCCTCAACAACAGCAAGACGTCCGAGTTTTCCGCCCCCCTCACCTCCTTCGACTGGAACGAGGTGGAGCCCAAGCGGATCGGGACCTCGAGCATTGACACCACCTGCACCATTTGGGACGTCGAAAGGGGCGTCGTCGAGACCCAGCTCATTGCTCATGACAAGGAGGTGTACGACATTGCGTGGGGGGAGGCGAGAGTGTTCGCCTCCGTTTCCGCTGATGGGTCGGTCCGAATATTCGATTTGAGGGACAAGGAGCACTCCACCATCATATACGAAAGTCCACAACCGGACACCCCTTTGCTTAGGCTGGCCTGGAACAAGCAGGACTTGCGATACATGGCCACTACCTTGATGGACAGCAACAAAGTTGTTATTTTGGATATAAGATCCCCCGCCAGGCCCGTTGCGGAGCTCGAAAGGCACCATGCCAGTGTAAATGCCATCGCCTGGGCTCCTCAGAGCTGCAGGCACATTTGTTCGGTTGGGGATGATGGCCACTCCCTTATTTGGGAGTTGCCCACTGTTGCAGGCCCTAATGGAATCGATCCAACTTCTATGTATTCTGCCGACTCTGAGATTAACCAGCTCCAGTGGTCTGCAGCGCAGCCTGAGTGGATAGCAATTGCATATTCAAATAAGATGCGGCTTTTGAAGGTCTGA 930 56.56 MAISSSSPARTHHPIALGSFIEDYPNRVDVVFFDPDSLSLTTNPSLSFDHPYPPTKLMFHPSPSSDLLVSSGDFLRLWDLRDSSIEPLSVLNNSKTSEFSAPLTSFDWNEVEPKRIGTSSIDTTCTIWDVERGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATTLMDSNKVVILDIRSPARPVAELERHHASVNAIAWAPQSCRHICSVGDDGHSLIWELPTVAGPNGIDPTSMYSADSEINQLQWSAAQPEWIAIAYSNKMRLLKV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6232726 6233655 - Bda020770.1 Bda05g00144 6456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00144 309 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Bda05g00144 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 179 IPR001680 GO:0005515
Bda05g00144 309 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 309 IPR031104 -
Bda05g00144 309 Gene3D - 91 307 IPR015943 GO:0005515
Bda05g00144 309 SUPERFAMILY WD40 repeat-like 30 304 IPR036322 GO:0005515
Bda05g00144 309 PANTHER WD REPEAT CONTAINING PROTEIN 1 309 IPR045159 -
Bda05g00144 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 262 IPR001680 GO:0005515
Bda05g00144 309 SMART WD40_4 41 79 IPR001680 GO:0005515
Bda05g00144 309 SMART WD40_4 84 129 IPR001680 GO:0005515
Bda05g00144 309 SMART WD40_4 132 170 IPR001680 GO:0005515
Bda05g00144 309 SMART WD40_4 221 261 IPR001680 GO:0005515
Bda05g00144 309 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Bda05g00144 309 Pfam WD domain, G-beta repeat 139 170 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00144 K11805 DCAF7, HAN11; DDB1- and CUL4-associated factor 7 - zju:107409549 537.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00144 Bda-Chr5:6232726 Bda13g01911 Bda-Chr13:43454404 2.54E-141 dispersed
Bda05g01147 Bda-Chr5:59649045 Bda05g00144 Bda-Chr5:6232726 5.58E-119 transposed
Bda04g00237 Bda-Chr4:17695845 Bda05g00144 Bda-Chr5:6232726 3.00E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g958 . . Bda05g00144 . . . Bma10g01322 . Cmo16g00019 . . . . . . . Cpe14g00015 . . . . . . . . . . . . . . Cone1ag1023 Cone5ag0730 . . . . . . Blo07g00313 . . . . . . . . . . Cma16g00016 . Car16g00016 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001974 2 3 2 4 2 2 3 2 2 2 2 2 2 2 2 3 2 4 2 2 2 2 2 2 2 1 2 2 3 1 66