Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00153 ATGTCATCAGTATCGAGCCAACCGCAGTTCAGGTACACACAACCACCATCCAAGGTTCTTCATTTGAGGAACTTGCCATGGGAGTGCTCAGAGGAAGAGCTTGTTGAACTTGGGAAGCCATTTGGTAAAGTTGTGAACACAAAATGCAATGTTGGAGCCAATCGTAATCAAGCCTTTATTGAATTTGCTGATTTGAATCAAGCAATTGCTATGATATCATACTACGCCTCATCCTCGGAGCCTGCTCAAGTTAGGGGGAAAACTGTCTACCTACAATATTCCAACCGACAAGAAATAGTTAACAACAAAACTGCTGATGACATTGCTGGGAACGTCCTTCTGGTAACAATTGAGGGTGCAGATGCCCGTCTTGTCAGCATTGATGTTCTACATTTAGTATTTTCAGCTTTTGGGTTTGTGCATAAAATTACTACTTTTGAGAAAACTGCCGGCTTCCAGGCTTTGGTGCAATTTTCTGATACAGAGACAGCTTCTTCCGCAAAAAACGCCTTAGACTCAAGGAGCATTCCAAGGTATCTGCTGCCTGATCACGTGGGAATATGTTCTCTAAAGATCACTTATTCTGCTCATGTCGATCTGAGTGTAAAATTCCAGAGCCACCGAAGCAGGGACTACACTAATCCATATCTTCCTGTCGCTCCATCGGCAATTGATGGAAGTGGTCAGATGAGCGTAGGGTTGGATGGGAAAAAACTTGAACCTGAGAGTAATGTTCTTCTTGCCTCAATTGAGAATATGCAGTATGCTGTCACCTTGGAGATTTTACACATGGTATTTTCTGCTTTTGGGCCAATTCAGAAAATTGCCATGTTTGATAAAAATGGTGGAGTTCAAGCTTTGATTCAGTACCAAGATGTTCAAAGCGCTGTCGCTGCCAAGGAAGCCTTGGAAGGACACTGCATCTATGATGGTGGGTTTTGCAAGCTTCACATCTCTTATTCTCGTCACACTGATCTAAGCATCAAGGTTAACAATGATCGCAGCAGAGACTACACGATCCCGAACACTCCTGTCGTCAATCCACAGGCATCCTTGGTGGGGCAGCAGCCATCTCAAATGGCAGGTCCTTCCACCCATCAATACTCCGGTCAAGATCAGCCTATGTGGGGTCAGGGCCAACCTCATTCGATGGCAATGCAGATGCACAATCCTTACAAGTTGCCAGGACCAGGGTCCGTGCCACCCCAAATGGCTCATGATACGATGCCCAACCACCAGTTTACACAATTGCCTCCATATCGCCCTGATCGGATTCAATAA 1281 45.2 MSSVSSQPQFRYTQPPSKVLHLRNLPWECSEEELVELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTADDIAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDSRSIPRYLLPDHVGICSLKITYSAHVDLSVKFQSHRSRDYTNPYLPVAPSAIDGSGQMSVGLDGKKLEPESNVLLASIENMQYAVTLEILHMVFSAFGPIQKIAMFDKNGGVQALIQYQDVQSAVAAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNPQASLVGQQPSQMAGPSTHQYSGQDQPMWGQGQPHSMAMQMHNPYKLPGPGSVPPQMAHDTMPNHQFTQLPPYRPDRIQ 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6383583 6389037 - Bda020780.1 Bda05g00153 6465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00153 426 Pfam RRM-like domain 243 321 IPR021790 -
Bda05g00153 426 Gene3D - 5 110 IPR012677 -
Bda05g00153 426 SMART rrm1_1 247 317 IPR000504 GO:0003723
Bda05g00153 426 SMART rrm1_1 19 92 IPR000504 GO:0003723
Bda05g00153 426 MobiDBLite consensus disorder prediction 354 373 - -
Bda05g00153 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 - -
Bda05g00153 426 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 417 - -
Bda05g00153 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Bda05g00153 426 MobiDBLite consensus disorder prediction 396 426 - -
Bda05g00153 426 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 1 417 - -
Bda05g00153 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 323 IPR000504 GO:0003723
Bda05g00153 426 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Bda05g00153 426 SUPERFAMILY RNA-binding domain, RBD 6 102 IPR035979 GO:0003676
Bda05g00153 426 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Bda05g00153 426 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Bda05g00153 426 Gene3D - 242 347 IPR012677 -
Bda05g00153 426 Gene3D - 111 221 IPR012677 -
Bda05g00153 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Bda05g00153 426 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Bda05g00153 426 SUPERFAMILY RNA-binding domain, RBD 249 344 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00153 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - cpap:110823224 705.671
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00153 Bda06g00777 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01231 Bda-Chr1:47665664 Bda05g00153 Bda-Chr5:6383583 2.60E-07 dispersed
Bda05g00112 Bda-Chr5:5516670 Bda05g00153 Bda-Chr5:6383583 0 dispersed
Bda05g00153 Bda-Chr5:6383583 Bda13g01425 Bda-Chr13:36947009 1.54E-06 dispersed
Bda05g00153 Bda-Chr5:6383583 Bda13g01695 Bda-Chr13:40322884 3.78E-149 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g879 . . Bda05g00153 . Bpe03g00241 Bpe07g01008 Bma10g01289 . . . . . Car02g00915 . . Cpe05g00610 . . . . . . . . . . . . . . . . . . . . Csa05g00064 . . . . Bda06g00777 . . . . Bma12g01192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002979 3 2 4 6 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 1 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00153 Bda_Chr05 FPKM 0.43686 0.386127 0.052444 0.0 0.592372 0.318007 1.007123 0.0 0.103271