Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00187 GTAATGGCTGCCCCTACTATGGCTCTTTCTTCACCATCTTTTGCTGGAAAGGCGGTGCAGCTCTCTCCTTCTGCTCCGATGATTTTCGCCAATGGAAGAGTTAGTATGAGGAAGACCACCTCCTCTGGCAGCCCATGGTATGGTCCCGACCGTGTAAAGTACTTGGGTCCATTCTCCGGTGAAGCTCCATCCTACCTGACTGGAGAATTCCCAGGAGATTATGGCTGGGACACTGCTGGATTATCGGCTGACCCAGAGACCTTTGCAAAGAACCGGGAGCTGGAAGTTATCCACTGTCGTTGGGCTATGCTCGGAGCTCTCGGATGCGTATTCCCGGAGCTTCTGTCCAGAAACGGCGTGAAGTTCGGAGAGGCCGTTTGGTTTAAGGCTGGATCTCAGATCTTCAGCGACGGAGGACTTGATTACTTAGGGAACCCTAGCTTGGTCCACGCTCAAAGCATCTTAGCCATATGGGCTTGTCAGGTCATCTTGATGGGAGCCGTCGAAGGTTACCGTGTCGCTGGAGGACCACTTGGAGAAATCACCGACCCAATCTATCCTGGTGGATCGTTTGATCCATTGGGTCTAGCAGACGACCCAGAGGCATTTGCAGAGCTAAAAGTGAAGGAGATAAAGAATGGAAGACTAGCCATGTTCTCAATGTTTGGATTCTTCGTTCAGGCTATTGTCACCGGAAAGGGACCTTTGGAGAATCTGGCCGATCACCTTGCCGACCCAGTTAACAACAATGCCTGGGCCTATGCCACCAACTTTGTTCCCGGAAAGTGA 789 51.71 VMAAPTMALSSPSFAGKAVQLSPSAPMIFANGRVSMRKTTSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21442977 21443765 + Bda020952.1 Bda05g00187 6499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00187 262 Gene3D Chlorophyll a/b binding protein domain 53 255 - -
Bda05g00187 262 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 262 - -
Bda05g00187 262 SUPERFAMILY Chlorophyll a-b binding protein 45 259 - -
Bda05g00187 262 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 262 IPR001344 GO:0009765|GO:0016020
Bda05g00187 262 Pfam Chlorophyll A-B binding protein 62 228 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00187 Bda-Chr5:21442977 Bda07g00941 Bda-Chr7:10963433 0 dispersed
Bda11g00909 Bda-Chr11:8906510 Bda05g00187 Bda-Chr5:21442977 4.95E-66 dispersed
Bda07g01813 Bda-Chr7:35220537 Bda05g00187 Bda-Chr5:21442977 1.58E-164 transposed
Bda05g00395 Bda-Chr5:48965605 Bda05g00187 Bda-Chr5:21442977 1.23E-163 transposed
Bda14g01617 Bda-Chr14:40739266 Bda05g00187 Bda-Chr5:21442977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00187 K08912 - rcu:8264152 512.686