Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00249 ATGATTACTGTTGCGTCCTCTATTGAAGCACAGCAGCCGGAGATTTCTCCGACGGTGGTTAAAACCGCAGGTCCAGACCTTCTTAGTGAGGCGGATTCCGAAACTAAGCACGTCTTTAAATCGAAGTTACCCGACATTCCCATCTCTAACCACCTCCCTCTTCCGACTTACTGCTTCGAACGCCTCTCCGAGTTCTCGGACCGTCCATGTCTGATTGTTGGATCCTCCGGGAAAACTTACACGTTCGCAGAAACCCATTTCATTTCCCAGAGAATCGGAGCCGGATTGACAAAACTCGGTATAAAAAAGAACGACGTGATTATGATTCTCCTCCAAAACTGCGCTGAATTCGTCCTGACATTCGTTGGAGCGGCCATGATCGGTGCCGTCACCACTACAGCCAACCCTTTCTACACCGGTGCCGAAGTTTTCAAGCAAATAAAATCCTCCGGCGCCAAACTGATTGTCACGCAGTCCCAGTATGTGGAAAAACTCCGAGATACGGCGGATGATGGCCCCAAGTTCGGCGAGGATTTCACCGTAATAACCATTGACAACCCCCCGGAGAAATGCCTACACTTCTCGGCAATTTCCGAAGCCAACGAGGCTGATCTTCCAGCTGTCTGTATCGAGCCAGAAGACCCAGTGGCGCTTCCGTTCTCCTCCGGCACCACCGGCCTTCCGAAGGGAGTAATTCTCACCCACAAAAGCTTAATAACCAGCGTGGCTCAGCAAGTAGACGGAGAAAATCCAAATCTATATCTAACTACTGACGACGTCGTTTTGTGCGTTCTCCCACTTTTCCACATATACTCTCTCAACAGCGTCCTTTTGTGCTCCTTGAGAGCAGGAGCGGCCGTTTTGCTCATGCAAAAGTTCGAGATAGGGGCATTTTTGGAATTAATTGTCCGGCACAAGGTGTCAGTGGCCGCAGTCGTCCCGCCGCTGGTTTTGGCGTTGGCAAAAGATCCGAAGGTGGCGGAGTTCGACCTCAGCTCCATCCGGGTGGTGTTGTCGGGGGCGGCACCGCTGGGCAAGGAGCTCGAGGAGGCGCTCAAGAGCCGACTGCCGCAAGCCACGCTTGGGCAGGGATATGGGATGACTGAGGCTGGGCCAGTGCTGTCAATGTGCTTGGGTTTCGCCCGGCAGCCGTTTCCGACCAAATCTGGGTCGTGCGGAACGGTGGTCAGAAACGCGGAGCTGAAGGTCATCGACCCTCTCACTGGCAACTCCCTTGGTTACAACAAGCCGGGAGAAATCCTCATTCGTGGCTCCCAAATTATGAAAGGGTATTTGAACGACGATGAAGCCACGGCAAACACCATTGATGTTGAGGGATGGCTTCACACAGGAGATATTGGTTATGTCGACGAGGACGACGAAGTTTTCATAGTTGATCGTGTAAAAGAACTCATTAAGTTCAAAGGATTTCAGGTGCCACCAGCTGAGCTCGAGTCTCTTCTTGTGAGCCACCCATCAATTGCAGACGCAGCAGTAGTGCCGCAAAAAGATGCAGTTGCTGGGGAAGTTCCTGTTGCGTTTGTTGTTCGTTCAAATGGGTTTGAACTCAGTGAAGATGCCGTGGTATTTTACAAGAAACTACACAGAGTATACTTTGTGCACGCAATTCCAAAGTCTCCAGCAGGAAAAATTTTGAGAAAGGATTTAAGAGCAAAGCTTTCATCGCCTTCTCCTTTCTGCTAA 1704 50.94 MITVASSIEAQQPEISPTVVKTAGPDLLSEADSETKHVFKSKLPDIPISNHLPLPTYCFERLSEFSDRPCLIVGSSGKTYTFAETHFISQRIGAGLTKLGIKKNDVIMILLQNCAEFVLTFVGAAMIGAVTTTANPFYTGAEVFKQIKSSGAKLIVTQSQYVEKLRDTADDGPKFGEDFTVITIDNPPEKCLHFSAISEANEADLPAVCIEPEDPVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPNLYLTTDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGAFLELIVRHKVSVAAVVPPLVLALAKDPKVAEFDLSSIRVVLSGAAPLGKELEEALKSRLPQATLGQGYGMTEAGPVLSMCLGFARQPFPTKSGSCGTVVRNAELKVIDPLTGNSLGYNKPGEILIRGSQIMKGYLNDDEATANTIDVEGWLHTGDIGYVDEDDEVFIVDRVKELIKFKGFQVPPAELESLLVSHPSIADAAVVPQKDAVAGEVPVAFVVRSNGFELSEDAVVFYKKLHRVYFVHAIPKSPAGKILRKDLRAKLSSPSPFC 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42387458 42390399 - Bda021223.1 Bda05g00249 6561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00249 567 Pfam AMP-binding enzyme C-terminal domain 483 550 IPR025110 -
Bda05g00249 567 Pfam AMP-binding enzyme 61 474 IPR000873 -
Bda05g00249 567 Gene3D - 469 562 IPR045851 -
Bda05g00249 567 CDD 4CL 48 556 - -
Bda05g00249 567 PANTHER 4-COUMARATE--COA LIGASE 3 37 559 - -
Bda05g00249 567 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 559 - -
Bda05g00249 567 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
Bda05g00249 567 SUPERFAMILY Acetyl-CoA synthetase-like 26 561 - -
Bda05g00249 567 Gene3D - 29 468 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01354 Bda-Chr3:49076453 Bda05g00249 Bda-Chr5:42387458 0 dispersed
Bda04g00768 Bda-Chr4:57173261 Bda05g00249 Bda-Chr5:42387458 0 dispersed
Bda05g00249 Bda-Chr5:42387458 Bda12g00551 Bda-Chr12:9109960 0 dispersed
Bda03g01352 Bda-Chr3:48786072 Bda05g00249 Bda-Chr5:42387458 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00249 K01904 - jre:108988342 885.174