Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00254 ATGGGTACCAGACCCCAGAATCCATGCCAGGAAGATGACGACGACGACCTTCATAGCGGTCGTGCCGCCACTATTCCAGGCCAATCTGTGTCCATGAGTGGCAGCATCGGATCCCCCTCCAGCCGAAGTGAGCAAACAATGGCTACCCCAGCCAGTGACAATACTTTCCTCCGATTAAACCACCTTGATATTCACGGAGACGATGCCGGATCGCAAGGCGCTATTTCTAACAAGAAGAAAAAGAGAGGTCAGCGTGCTGTTGGAGGCGATAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTGGAAAGCAAGGGAAGAACAACCTATAACGAGGTTGCAGATGAACTAGTGGCTGAGTTTGCTGATCCTAGCAGTAGTCTTGCATCCCCAGATCAGCAACAATATGATGAAAAGAACATCCGGCGAAGGGTATACGATGCCCTAAATGTTCTCATGGCAATGGACATAATATCGAAGGATAAGAAAGAGATACAATGGAAGGGTTTACCTCGAACAAGTCTGAATGATGTTGAAGAACTAAAGACAGAGAGGCAGGGACTTAGAAATAGAATAGATAAGAAAGCTGCATACCTGCAAGAGCTGGAGGAGCAATACGTAGGTCTTCAGAATCTGATTCAGCGAAATGAACAGTTATACAGCTCTGGAAATGCTCCAAGTGGTGGTGTGTCTTTACCTTTTATCCTGGTGCAGACCCGTCCGCACGCGACAGTTGAAGTAGAAATATCCGAAGATATGCAGCTTGTGCATTTTGACTTCAAAAGCACGCCTTTTGAGCTTCACGATGACAACTACGTATTGAAGGCGATGAAATTTTGTGAGAGGCAAGCTGGTGATAATAGTGCGCAGAATTTCATTGCAGACGGAGGGGAAGGTTCCGGAATCCAGGTCGTGTCTGTGAGGAAACCAGCATCACCACCACTTCCTGGAATTCTCAAAGCACGTGTCAAGCACGAGCACTAA 999 47.05 MGTRPQNPCQEDDDDDLHSGRAATIPGQSVSMSGSIGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAISNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDVEELKTERQGLRNRIDKKAAYLQELEEQYVGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFKSTPFELHDDNYVLKAMKFCERQAGDNSAQNFIADGGEGSGIQVVSVRKPASPPLPGILKARVKHEH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42521841 42532467 + Bda021229.1 Bda05g00254 6566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00254 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 - -
Bda05g00254 332 Gene3D - 86 179 IPR036388 -
Bda05g00254 332 PIRSF Txn_factor_DP 6 315 IPR015648 GO:0005667|GO:0051726
Bda05g00254 332 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Bda05g00254 332 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Bda05g00254 332 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Bda05g00254 332 Gene3D Transcription factor DP 180 300 IPR038168 -
Bda05g00254 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 IPR015648 GO:0005667|GO:0051726
Bda05g00254 332 CDD DP_DD 179 282 IPR014889 -
Bda05g00254 332 MobiDBLite consensus disorder prediction 1 49 - -
Bda05g00254 332 Pfam Transcription factor DP 182 295 IPR014889 -
Bda05g00254 332 Coils Coil 183 224 - -
Bda05g00254 332 SMART DP_2 181 330 IPR014889 -
Bda05g00254 332 MobiDBLite consensus disorder prediction 64 94 - -
Bda05g00254 332 MobiDBLite consensus disorder prediction 24 49 - -
Bda05g00254 332 SUPERFAMILY E2F-DP heterodimerization region 180 290 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00254 K04683 TFDP1; transcription factor Dp-1 - zju:107414839 565.844
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15867 PF08781 DP 7.30E-42 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00254 Bda_Chr05 FPKM 0.485293 1.321071 1.707546 1.410812 1.163682 0.566189 0.975065 2.729411 1.988108