Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00277 ATGTCCGACATTGATCTGGAATCCGGCGGACACCAACGTTCGGTAACGGGAAGTGACGTAAGCGTCGAGGATAGCGTCTACTTCTCCGACGCCGACGAGGATTCCTGCTATTCTCAGTTCTTCTCGCCAAACGGCGGTTCTTACGACGAGTACATGTTCTCCCTCGGCTTCGCCGGGATCCTTTCGGCTTCTCAAAGAGGTTCATCGGCGGCGGATTCTTCGGTGAAAGTCAAAATCGAAAGTGGGGTAGCTGAAATCAAGGCGCATGTGGCTAAAGTAGAGAGAGATTGCAGAATTTGTCATCTGGGTTTGGAAAGTAACAGCCGGGAGTCTGGCGTTCCGATCGAATTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGACCTGGTTCAAAATCAAAGGAAATAAGAAGTGCGAGATTTGTCATTCGATTGCTCGGAATGTGCTGGGAGCCCACGAGATTGAGCTGATGGAGCGGACCAACGAGGCCGGCAATGCCTCCTCAATTGCATCGGCTCCGGCCCCTCCTGCAGAGAGCCAAAGGTTCTGGACTGGACGTAGGTTCCTGAATTTTCTGCTTGCCTGCGTGGTGTTTGCATTTGTCATTTCATGGCTCTTCCACTTCAATGTTTCATCATGGAATCTTGCCATCTTCTACTACTGGAATGGAAGAAGAAAATTGACTTGTTCCAGCTCTGGGAGTGTTCATATTGGTCTATCTTTTTATATCCTCTGCTCTTCTTCACATAACCAGAATATGATGGTTGTATAG 792 49.24 MSDIDLESGGHQRSVTGSDVSVEDSVYFSDADEDSCYSQFFSPNGGSYDEYMFSLGFAGILSASQRGSSAADSSVKVKIESGVAEIKAHVAKVERDCRICHLGLESNSRESGVPIELGCSCKEDLAAAHKHCAETWFKIKGNKKCEICHSIARNVLGAHEIELMERTNEAGNASSIASAPAPPAESQRFWTGRRFLNFLLACVVFAFVISWLFHFNVSSWNLAIFYYWNGRRKLTCSSSGSVHIGLSFYILCSSSHNQNMMVV 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44384939 44386655 - Bda021281.1 Bda05g00277 6589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00277 263 PANTHER OS01G0850200 PROTEIN 3 219 - -
Bda05g00277 263 PANTHER ZINC FINGER, RING-CH-TYPE 3 219 - -
Bda05g00277 263 Pfam RING-variant domain 97 148 IPR011016 GO:0008270
Bda05g00277 263 SUPERFAMILY RING/U-box 94 151 - -
Bda05g00277 263 ProSiteProfiles Zinc finger RING-CH-type profile. 89 155 IPR011016 GO:0008270
Bda05g00277 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 155 IPR013083 -
Bda05g00277 263 SMART ringv_2 96 149 IPR011016 GO:0008270
Bda05g00277 263 CDD RING_CH-C4HC3_MARCH 97 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00040 Bda-Chr2:1900951 Bda05g00277 Bda-Chr5:44384939 4.07E-26 dispersed
Bda02g00042 Bda-Chr2:1974476 Bda05g00277 Bda-Chr5:44384939 7.42E-27 dispersed
Bda05g00277 Bda-Chr5:44384939 Bda05g00947 Bda-Chr5:57993974 7.82E-110 dispersed
Bda03g01381 Bda-Chr3:50097905 Bda05g00277 Bda-Chr5:44384939 9.16E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00277 - - csv:101218915 326.635