Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00331 ATGTACGGACTGATTCCGGCGGGAAATGGATCGCAATTAGGGCAGCAGCCGGAATGGAGTCCGGACGGAGGCGAAACAGGTATGCAAGAATCCATGTGGCAGTTGGGGCTGACCAATAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTATATTATATGCGAACTGGGTTCTGTGGGTATGGAAGCAGATGTCGTTTCAATCATCCTCGCGATCGTGCTGCGGTCGTAGCTGCTGTAAGAGCTACCGGGGATTACCCAGAACGAGTAGGGGAACCTGTGTGTCAGTATTATTTGAAAACTGGGACGTGTAAATTTGGTGCATCCTGCAAGTTTCACCATCCAAAACATGGAGGCGGATCCCTGAACCAGGCTCCTCTTAATATCTATGGATACCCACTTCGACCGGGTGAGAGAGAATGCTCCTACTATTTAAAAACGGGGCAATGCAAATTTGGTATAACCTGTAAATTCCATCATCCTCAAACAGCTGGCTCATCCACGCCAAATACCACTCCTCAATTTTATCCATCGGTGCAGTCTCCTTCAGTTCCTATGCCTGACCAATATGGAGTGGCATCCACTAGCTTGAGGGTAGCCAGGCCACCTATTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCCAGGATGGAGTCCATACTCGGCACCTGTAAGCCCTGCCTTATCTCCGGGTGCTCCACACACAGTTGGAGCAACTTCTGTTTATGGAGTAGCCCAGCTGTCTTCTACAACCTCATCTCTTCCACGACCCTATTCCTCTTTACCTTCATCTGTTGGCCCTTCTAGCAGTAGGGAACAATTGTTTCCAGAGAGACCTGGTGAACCTGAATGCCAGTATTACATAAGAACTGGTGACTGCAAGTTTGGCCTAGCTTGTCGATATCATCATCCTCACAACCGGATTTTACCTAAGACAAATTGTGTTCTTAGTGCACTTGGCCTTCCCTTGCGACCGTTTCTTATTCATATTTGTAATATGCAGGGGGTTGAGCCTTGTACATTTTACTTGCAAAATGGACACTGCAAATTCGGATCAACCTGTAAGTTTGATCATCCTATGGGGACAATGAGATACAGTCCATCAGCCTCCTCTCTCATCAACATGCCCGTTGCTCCTTATCCCGTAGGGTCCCTGCTTGCCACTTTGGCTCCTTCATCATCTTCTTCTGAGCTTAAACCAGAGCTGATGTCTGGATCAAGGAAAGAGTCATATTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTAGTGTGCAACTTTCTAGTCAAAGTACTGCTCCTTTGAACAACAGCAGGAACACTAGACAAGGCGGTGAGACAAGGCATTCGAATTAG 1434 47.28 MYGLIPAGNGSQLGQQPEWSPDGGETGMQESMWQLGLTNRESYPERPGVPNCVYYMRTGFCGYGSRCRFNHPRDRAAVVAAVRATGDYPERVGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIYGYPLRPGERECSYYLKTGQCKFGITCKFHHPQTAGSSTPNTTPQFYPSVQSPSVPMPDQYGVASTSLRVARPPILPGSYVQGTYGPVLLPPGVVPIPGWSPYSAPVSPALSPGAPHTVGATSVYGVAQLSSTTSSLPRPYSSLPSSVGPSSSREQLFPERPGEPECQYYIRTGDCKFGLACRYHHPHNRILPKTNCVLSALGLPLRPFLIHICNMQGVEPCTFYLQNGHCKFGSTCKFDHPMGTMRYSPSASSLINMPVAPYPVGSLLATLAPSSSSSELKPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSSVQLSSQSTAPLNNSRNTRQGGETRHSN 477
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 46888113 46894978 - Bda021370.1 Bda05g00331 6643
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00331 477 MobiDBLite consensus disorder prediction 424 471 - -
Bda05g00331 477 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bda05g00331 477 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bda05g00331 477 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Bda05g00331 477 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bda05g00331 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 318 IPR000571 GO:0046872
Bda05g00331 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Bda05g00331 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Bda05g00331 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Bda05g00331 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 374 IPR000571 GO:0046872
Bda05g00331 477 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 15 457 - -
Bda05g00331 477 PANTHER PROTEIN PHOSPHATASE RELATED 15 457 - -
Bda05g00331 477 Gene3D - 291 385 - -
Bda05g00331 477 Gene3D - 45 121 - -
Bda05g00331 477 MobiDBLite consensus disorder prediction 264 291 - -
Bda05g00331 477 ProSiteProfiles Zinc finger C3H1-type profile. 292 320 IPR000571 GO:0046872
Bda05g00331 477 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Bda05g00331 477 SUPERFAMILY CCCH zinc finger 140 164 IPR036855 GO:0046872
Bda05g00331 477 MobiDBLite consensus disorder prediction 409 477 - -
Bda05g00331 477 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bda05g00331 477 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Bda05g00331 477 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Bda05g00331 477 SMART c3hfinal6 292 319 IPR000571 GO:0046872
Bda05g00331 477 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Bda05g00331 477 MobiDBLite consensus disorder prediction 264 285 - -
Bda05g00331 477 Gene3D - 123 172 - -
Bda05g00331 477 SUPERFAMILY CCCH zinc finger 297 321 IPR036855 GO:0046872
Bda05g00331 477 MobiDBLite consensus disorder prediction 1 29 - -
Bda05g00331 477 SUPERFAMILY CCCH zinc finger 349 378 IPR036855 GO:0046872
Bda05g00331 477 SUPERFAMILY CCCH zinc finger 50 75 IPR036855 GO:0046872
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00331 Bda-Chr5:46888113 Bda08g00280 Bda-Chr8:2916395 4.45E-15 dispersed
Bda12g00047 Bda-Chr12:290653 Bda05g00331 Bda-Chr5:46888113 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15870 PF00642 zf-CCCH 1.60E-09 CL0537 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00331 - - tcc:18613492 739.954