Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g00331 | ATGTACGGACTGATTCCGGCGGGAAATGGATCGCAATTAGGGCAGCAGCCGGAATGGAGTCCGGACGGAGGCGAAACAGGTATGCAAGAATCCATGTGGCAGTTGGGGCTGACCAATAGAGAATCGTATCCTGAGCGTCCTGGTGTACCTAACTGTGTATATTATATGCGAACTGGGTTCTGTGGGTATGGAAGCAGATGTCGTTTCAATCATCCTCGCGATCGTGCTGCGGTCGTAGCTGCTGTAAGAGCTACCGGGGATTACCCAGAACGAGTAGGGGAACCTGTGTGTCAGTATTATTTGAAAACTGGGACGTGTAAATTTGGTGCATCCTGCAAGTTTCACCATCCAAAACATGGAGGCGGATCCCTGAACCAGGCTCCTCTTAATATCTATGGATACCCACTTCGACCGGGTGAGAGAGAATGCTCCTACTATTTAAAAACGGGGCAATGCAAATTTGGTATAACCTGTAAATTCCATCATCCTCAAACAGCTGGCTCATCCACGCCAAATACCACTCCTCAATTTTATCCATCGGTGCAGTCTCCTTCAGTTCCTATGCCTGACCAATATGGAGTGGCATCCACTAGCTTGAGGGTAGCCAGGCCACCTATTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCCAGGATGGAGTCCATACTCGGCACCTGTAAGCCCTGCCTTATCTCCGGGTGCTCCACACACAGTTGGAGCAACTTCTGTTTATGGAGTAGCCCAGCTGTCTTCTACAACCTCATCTCTTCCACGACCCTATTCCTCTTTACCTTCATCTGTTGGCCCTTCTAGCAGTAGGGAACAATTGTTTCCAGAGAGACCTGGTGAACCTGAATGCCAGTATTACATAAGAACTGGTGACTGCAAGTTTGGCCTAGCTTGTCGATATCATCATCCTCACAACCGGATTTTACCTAAGACAAATTGTGTTCTTAGTGCACTTGGCCTTCCCTTGCGACCGTTTCTTATTCATATTTGTAATATGCAGGGGGTTGAGCCTTGTACATTTTACTTGCAAAATGGACACTGCAAATTCGGATCAACCTGTAAGTTTGATCATCCTATGGGGACAATGAGATACAGTCCATCAGCCTCCTCTCTCATCAACATGCCCGTTGCTCCTTATCCCGTAGGGTCCCTGCTTGCCACTTTGGCTCCTTCATCATCTTCTTCTGAGCTTAAACCAGAGCTGATGTCTGGATCAAGGAAAGAGTCATATTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTAGTGTGCAACTTTCTAGTCAAAGTACTGCTCCTTTGAACAACAGCAGGAACACTAGACAAGGCGGTGAGACAAGGCATTCGAATTAG | 1434 | 47.28 | MYGLIPAGNGSQLGQQPEWSPDGGETGMQESMWQLGLTNRESYPERPGVPNCVYYMRTGFCGYGSRCRFNHPRDRAAVVAAVRATGDYPERVGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIYGYPLRPGERECSYYLKTGQCKFGITCKFHHPQTAGSSTPNTTPQFYPSVQSPSVPMPDQYGVASTSLRVARPPILPGSYVQGTYGPVLLPPGVVPIPGWSPYSAPVSPALSPGAPHTVGATSVYGVAQLSSTTSSLPRPYSSLPSSVGPSSSREQLFPERPGEPECQYYIRTGDCKFGLACRYHHPHNRILPKTNCVLSALGLPLRPFLIHICNMQGVEPCTFYLQNGHCKFGSTCKFDHPMGTMRYSPSASSLINMPVAPYPVGSLLATLAPSSSSSELKPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSSVQLSSQSTAPLNNSRNTRQGGETRHSN | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 46888113 | 46894978 | - | Bda021370.1 | Bda05g00331 | 6643 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g00331 | 477 | MobiDBLite | consensus disorder prediction | 424 | 471 | - | - | |
| Bda05g00331 | 477 | ProSiteProfiles | Zinc finger C3H1-type profile. | 137 | 165 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SUPERFAMILY | CCCH zinc finger | 94 | 118 | IPR036855 | GO:0046872 | |
| Bda05g00331 | 477 | ProSiteProfiles | Zinc finger C3H1-type profile. | 347 | 375 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 294 | 318 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 94 | 118 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 164 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 349 | 374 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 15 | 457 | - | - | |
| Bda05g00331 | 477 | PANTHER | PROTEIN PHOSPHATASE RELATED | 15 | 457 | - | - | |
| Bda05g00331 | 477 | Gene3D | - | 291 | 385 | - | - | |
| Bda05g00331 | 477 | Gene3D | - | 45 | 121 | - | - | |
| Bda05g00331 | 477 | MobiDBLite | consensus disorder prediction | 264 | 291 | - | - | |
| Bda05g00331 | 477 | ProSiteProfiles | Zinc finger C3H1-type profile. | 292 | 320 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | ProSiteProfiles | Zinc finger C3H1-type profile. | 91 | 119 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SUPERFAMILY | CCCH zinc finger | 140 | 164 | IPR036855 | GO:0046872 | |
| Bda05g00331 | 477 | MobiDBLite | consensus disorder prediction | 409 | 477 | - | - | |
| Bda05g00331 | 477 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SMART | c3hfinal6 | 91 | 118 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SMART | c3hfinal6 | 137 | 164 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SMART | c3hfinal6 | 292 | 319 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | SMART | c3hfinal6 | 347 | 374 | IPR000571 | GO:0046872 | |
| Bda05g00331 | 477 | MobiDBLite | consensus disorder prediction | 264 | 285 | - | - | |
| Bda05g00331 | 477 | Gene3D | - | 123 | 172 | - | - | |
| Bda05g00331 | 477 | SUPERFAMILY | CCCH zinc finger | 297 | 321 | IPR036855 | GO:0046872 | |
| Bda05g00331 | 477 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Bda05g00331 | 477 | SUPERFAMILY | CCCH zinc finger | 349 | 378 | IPR036855 | GO:0046872 | |
| Bda05g00331 | 477 | SUPERFAMILY | CCCH zinc finger | 50 | 75 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00331 | Bda-Chr5:46888113 | Bda08g00280 | Bda-Chr8:2916395 | 4.45E-15 | dispersed | |
| Bda12g00047 | Bda-Chr12:290653 | Bda05g00331 | Bda-Chr5:46888113 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15870 | PF00642 | zf-CCCH | 1.60E-09 | CL0537 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g00331 | - | - | tcc:18613492 | 739.954 |