Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00334 ATGGCAACAAACAGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAACTTCACAGACGAGGGCATAATCTACCATGGAAACTTCGGCAGAGAACGACAGCCGAAGTTAAGAAACGGGTCTACATTTGCCCCGAGCCGTCGTGCGTTCATCACAACCCGGCTCGAGCTCTCGGAGATCTGACTGGAATCAAAAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATCAAAAGACATGTGGGACAAGAGAATACAAATGTGACTGCGGAACAATCTTTTCCAGGAGAGATAGCTTTATTACACACAGGGCCTTTTGCGATGCATTAGCAGAAGAAAACAACAAAGTAAACCAAGAAATGATGAACAACAACAGCAACATGTTACCCTCATCAAACTTGCAAACCCTAAGAATGGCAGAATCCTTATTAGGATCAGCACCTCCTCAAATGGCTGAGCAACTGATGAACACCTGCGAGACCAAAAACCCTCTCAAGTTCCTCTCCCAAGACTTCGTTCCGATGCCATTTAAGACGATGAACATGTCGACCCTCTTCCCCAACACCCCCAGAAACATCTCGTCGTCTTCTTCTTCTTCAGCCCTGCAACTCAGTACTTCTACCTCTTCTTCTACCTTCAGCTACCTTCACGACTGTAAAAACGGCGCCCAAGTTTCTGGTTTAATACCTGCGATGTCGGCTACTGCGTTGCTACAGAAAGCAGCTCAAATGGGAGCCACTGCAAGCAATAGTATGAACTCACCCATGTTGCAGAAAAGCTTCATTTCTACAACAATGGCCGCTCCTGATCAAATTCTGAGAGATTTAGAGCAAGATGACAGTAACAGCACCGGGATGGTTGGAGAGAAAGAGTGGAGCTGGTTCTCAAGATATGGAGGGAGTAGTGGGAGCAATGAGACGATGACCCTAGATTTATTGGGAAAAGGAGGGTCTAGGAAAGGAAACTTGAATCAGCAAGAAGAGCAACAGCGGCTGGATTTGCCCATTTTAAATCCGTTTCAGGACAAGATTTCGAGTGGAGAGTCGGGAATGGAGGAACCAGTTTGGGAGGTTTGA 1146 45.55 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTAEVKKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQEMMNNNSNMLPSSNLQTLRMAESLLGSAPPQMAEQLMNTCETKNPLKFLSQDFVPMPFKTMNMSTLFPNTPRNISSSSSSSALQLSTSTSSSTFSYLHDCKNGAQVSGLIPAMSATALLQKAAQMGATASNSMNSPMLQKSFISTTMAAPDQILRDLEQDDSNSTGMVGEKEWSWFSRYGGSSGSNETMTLDLLGKGGSRKGNLNQQEEQQRLDLPILNPFQDKISSGESGMEEPVWEV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46957742 46959497 - Bda021374.1 Bda05g00334 6646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00334 381 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Bda05g00334 381 Gene3D Classic Zinc Finger 6 50 - -
Bda05g00334 381 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 295 - -
Bda05g00334 381 SMART c2h2final6 47 77 IPR013087 -
Bda05g00334 381 SMART c2h2final6 82 102 IPR013087 -
Bda05g00334 381 SMART c2h2final6 6 28 IPR013087 -
Bda05g00334 381 MobiDBLite consensus disorder prediction 337 381 - -
Bda05g00334 381 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bda05g00334 381 Gene3D Classic Zinc Finger 61 141 - -
Bda05g00334 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Bda05g00334 381 Coils Coil 130 150 - -
Bda05g00334 381 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 295 - -
Bda05g00334 381 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00334 Bda-Chr5:46957742 Bda10g00126 Bda-Chr10:3491616 7.36E-105 dispersed
Bda05g00334 Bda-Chr5:46957742 Bda10g00123 Bda-Chr10:3211502 1.12E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15871 PF00096 zf-C2H2 0.0036 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00334 - - cann:107863999 402.134