Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g00334 | ATGGCAACAAACAGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAACTTCACAGACGAGGGCATAATCTACCATGGAAACTTCGGCAGAGAACGACAGCCGAAGTTAAGAAACGGGTCTACATTTGCCCCGAGCCGTCGTGCGTTCATCACAACCCGGCTCGAGCTCTCGGAGATCTGACTGGAATCAAAAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATCAAAAGACATGTGGGACAAGAGAATACAAATGTGACTGCGGAACAATCTTTTCCAGGAGAGATAGCTTTATTACACACAGGGCCTTTTGCGATGCATTAGCAGAAGAAAACAACAAAGTAAACCAAGAAATGATGAACAACAACAGCAACATGTTACCCTCATCAAACTTGCAAACCCTAAGAATGGCAGAATCCTTATTAGGATCAGCACCTCCTCAAATGGCTGAGCAACTGATGAACACCTGCGAGACCAAAAACCCTCTCAAGTTCCTCTCCCAAGACTTCGTTCCGATGCCATTTAAGACGATGAACATGTCGACCCTCTTCCCCAACACCCCCAGAAACATCTCGTCGTCTTCTTCTTCTTCAGCCCTGCAACTCAGTACTTCTACCTCTTCTTCTACCTTCAGCTACCTTCACGACTGTAAAAACGGCGCCCAAGTTTCTGGTTTAATACCTGCGATGTCGGCTACTGCGTTGCTACAGAAAGCAGCTCAAATGGGAGCCACTGCAAGCAATAGTATGAACTCACCCATGTTGCAGAAAAGCTTCATTTCTACAACAATGGCCGCTCCTGATCAAATTCTGAGAGATTTAGAGCAAGATGACAGTAACAGCACCGGGATGGTTGGAGAGAAAGAGTGGAGCTGGTTCTCAAGATATGGAGGGAGTAGTGGGAGCAATGAGACGATGACCCTAGATTTATTGGGAAAAGGAGGGTCTAGGAAAGGAAACTTGAATCAGCAAGAAGAGCAACAGCGGCTGGATTTGCCCATTTTAAATCCGTTTCAGGACAAGATTTCGAGTGGAGAGTCGGGAATGGAGGAACCAGTTTGGGAGGTTTGA | 1146 | 45.55 | MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTAEVKKRVYICPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQEMMNNNSNMLPSSNLQTLRMAESLLGSAPPQMAEQLMNTCETKNPLKFLSQDFVPMPFKTMNMSTLFPNTPRNISSSSSSSALQLSTSTSSSTFSYLHDCKNGAQVSGLIPAMSATALLQKAAQMGATASNSMNSPMLQKSFISTTMAAPDQILRDLEQDDSNSTGMVGEKEWSWFSRYGGSSGSNETMTLDLLGKGGSRKGNLNQQEEQQRLDLPILNPFQDKISSGESGMEEPVWEV | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 46957742 | 46959497 | - | Bda021374.1 | Bda05g00334 | 6646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g00334 | 381 | Pfam | Zinc finger, C2H2 type | 6 | 28 | IPR013087 | - | |
Bda05g00334 | 381 | Gene3D | Classic Zinc Finger | 6 | 50 | - | - | |
Bda05g00334 | 381 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 1 | 295 | - | - | |
Bda05g00334 | 381 | SMART | c2h2final6 | 47 | 77 | IPR013087 | - | |
Bda05g00334 | 381 | SMART | c2h2final6 | 82 | 102 | IPR013087 | - | |
Bda05g00334 | 381 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
Bda05g00334 | 381 | MobiDBLite | consensus disorder prediction | 337 | 381 | - | - | |
Bda05g00334 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
Bda05g00334 | 381 | Gene3D | Classic Zinc Finger | 61 | 141 | - | - | |
Bda05g00334 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 28 | IPR013087 | - | |
Bda05g00334 | 381 | Coils | Coil | 130 | 150 | - | - | |
Bda05g00334 | 381 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 295 | - | - | |
Bda05g00334 | 381 | SUPERFAMILY | beta-beta-alpha zinc fingers | 5 | 103 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda05g00334 | Bda-Chr5:46957742 | Bda10g00126 | Bda-Chr10:3491616 | 7.36E-105 | dispersed | |
Bda05g00334 | Bda-Chr5:46957742 | Bda10g00123 | Bda-Chr10:3211502 | 1.12E-103 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15871 | PF00096 | zf-C2H2 | 0.0036 | CL0361 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g00334 | - | - | cann:107863999 | 402.134 |