Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g00395 | ATGAGGAAAACAGGAGGAAAGCCTGCTTCTAGCTCTGGCAGCCCATGGTACGGACCTGACAGAGTCAAGTACCTCGGCCCGTTTTCCGGCGAGGCGCCATCGTATTTGACCGGCCAGTTTCCCGGAGATTACGGATGGGACACTGCCGGATTATCAGCCGACCCCGAGACATTTGCCAAAAACCGAGAGCTAGAAGTCATTCACTGCAGGTGGGCCATGCTCGGGGCATTGGGATGTGTATTCCCGGAGCTCCTCTCTAGAAACGGGGTCCAGTTCGGCGAAGCCGTCTGGTTCAAAGCCGGTTCACAAATATTCAGCGAGGGAGGGCTGGACTACCTCGGAAACCCAAGCCTGGTTCATGCACAGAGCATTTTGGCCATTTGGGCATCTCAGGTTATCTTGATGGGTGCCGTTGAGGGTTACCGTGTTGCCGGAGGGCCACTCGGGGAGGTGACCGACCCCATCTACCCAGGAGGAAGCTTTGATCCCCTGGGACTTGCTGATGACCCAGAGGCATTTGCCGAGCTTAAGGTGAAAGAAATCAAGAATGGACGACTAGCTATGTTCTCCATGTTCGGATTCTACGTGCAAGCCATAGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGATCATCTGGCCGACCCTGTAAACAACAATGCTTGGGCTTATGCCACCAACTTTGTACCTGGAAAGTGA | 699 | 54.65 | MRKTGGKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGQFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 48965605 | 48966303 | + | Bda021469.1 | Bda05g00395 | 6707 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g00395 | 232 | Pfam | Chlorophyll A-B binding protein | 32 | 198 | IPR022796 | - | |
| Bda05g00395 | 232 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 232 | IPR001344 | GO:0009765|GO:0016020 | |
| Bda05g00395 | 232 | Gene3D | Chlorophyll a/b binding protein domain | 23 | 225 | - | - | |
| Bda05g00395 | 232 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 1 | 232 | - | - | |
| Bda05g00395 | 232 | SUPERFAMILY | Chlorophyll a-b binding protein | 15 | 229 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00395 | Bda-Chr5:48965605 | Bda07g00940 | Bda-Chr7:10933820 | 4.08E-168 | dispersed | |
| Bda05g00415 | Bda-Chr5:49747641 | Bda05g00395 | Bda-Chr5:48965605 | 1.27E-114 | dispersed | |
| Bda05g00395 | Bda-Chr5:48965605 | Bda14g01617 | Bda-Chr14:40739266 | 1.92E-163 | transposed | |
| Bda05g00395 | Bda-Chr5:48965605 | Bda05g00187 | Bda-Chr5:21442977 | 1.23E-163 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g00395 | K08912 | - | rcu:8265899 | 469.544 |