Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00405 ATGGAGGAGAAAATTGGAGGATCGTTATCCGAGATTTCGTCAAACAGTCATCCATTTTCAGGCATCCTAGGCTTCTCCGAGTCGGAAAAGACTTGGCTAGGATTTATGGATCTTCTGGGAGTTGAAAAACTCTCTGCTCCATCCTTTTTTGATTTTCCATCTCTCCCTATTTTCACTTCAAATCCAAAAATCAATCATCTCAAAGAGAGTTCCGAAGTTTTCAATCATCCTCCCACTCCTAGCTCTCCCTCCATCTCATCTGCTTCTTGTGAAGATGCAGTAAATTATAATCAGCACCAAGCTAAAGCTCTGAACCAGGAAGAAGAACGTGAGAAAAAGACTCGAAACCAGAAACTGGTCTTTAATGGCGGCCATGGTGATGGGGAAACGCGAATAAGTTTGAAAGCGAAGAAGAAAGATGTAAAGAGGGAGAGAGAGCCAAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTGGAAGATGGGTATAGATGGAGAAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGGAGCTACTATCGTTGCACTAGCGCAGCGTGTAATGTAAAGAAAAGAGTAGAACGATCTTTCAGCGATCCAACCATTGTAGTCACAACCTACGAAGGTCAGCACACGCACCCAAGCCCCGTCATGACTCGACCAACCTTGACCATGGCTGCAGCACATGGTTCGGCCACAGTAAATCAAACCACAACCCTATCTCGCTTTCACTACCAAGACTATGGCAGTAATAACTTTTCTCCAAACGCAGCGTTCTTTGGTGAGAGGCGAGCTTGTAAGCAAGGACCTGCTTCGGCTTTAATGACGGACAATGGACTTCTCCAAGATATTATACCCTCTCATATGCTGAAGCAGGAGTAA 894 44.74 MEEKIGGSLSEISSNSHPFSGILGFSESEKTWLGFMDLLGVEKLSAPSFFDFPSLPIFTSNPKINHLKESSEVFNHPPTPSSPSISSASCEDAVNYNQHQAKALNQEEEREKKTRNQKLVFNGGHGDGETRISLKAKKKDVKREREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFSDPTIVVTTYEGQHTHPSPVMTRPTLTMAAAHGSATVNQTTTLSRFHYQDYGSNNFSPNAAFFGERRACKQGPASALMTDNGLLQDIIPSHMLKQE 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49364112 49365712 + Bda021481.1 Bda05g00405 6717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00405 297 PANTHER WRKY TRANSCRIPTION FACTOR 12 288 - -
Bda05g00405 297 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00405 297 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00405 297 SUPERFAMILY WRKY DNA-binding domain 152 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00405 297 Coils Coil 96 116 - -
Bda05g00405 297 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00405 297 Gene3D WRKY domain 137 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00405 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 288 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00405 Bda10g00668 CCT
Bda05g00405 Bda10g00668 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00405 Bda-Chr5:49364112 Bda13g00224 Bda-Chr13:2849666 7.75E-67 dispersed
Bda01g01064 Bda-Chr1:44875169 Bda05g00405 Bda-Chr5:49364112 2.15E-32 transposed
Bda07g01384 Bda-Chr7:16682238 Bda05g00405 Bda-Chr5:49364112 3.79E-33 transposed
Bda11g00335 Bda-Chr11:3759636 Bda05g00405 Bda-Chr5:49364112 1.02E-34 transposed
Bda11g01358 Bda-Chr11:15805064 Bda05g00405 Bda-Chr5:49364112 2.20E-32 transposed
Bda14g01185 Bda-Chr14:11728735 Bda05g00405 Bda-Chr5:49364112 1.35E-33 transposed
Bda10g00668 Bda-Chr10:40786411 Bda05g00405 Bda-Chr5:49364112 9.54E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15874 PF03106 WRKY 1.50E-26 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00405 - - jre:108993709 285.034