Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00413 ATGGTGGCAGAAGCTGAGGTGGTTGTTTGCAAAAAATGCCTGACTGTGTCCGAGGTCTACCGCCTCGGAAACGGAAACGATTACGACGATCATTGTCGAGTAGTCCGTGATTTCGGTACTCCGAGTATAAGCCGAGTTCGAACTTCAGAATCGGTTTCGTTATCAGAGATGATGGATTGCAAATCCAAAGAAAAAGTTTCGGATTCTGTTCTTGTAACTTCGGATCTACAGTATTTCCCAACCATTTGCTCCGGCAGCTATGCCGATATCGGACCACGGCCATACATGGAAGACAAACATGTACAGATGGACCATCTTTCGTCGCATGTCGGGGGATTGATCAAGTTTGCTCAGCCAAGTGCATTTTATGCGGTGTTCGACGGCCATGGCGGGGCTGATGCGGCAAATTTCATTGCGAAAAATGCAAAGAGGTGTTTTTTCGAAGATGTCAATTTTCCAAATTCTCGGGAAGTAGACGAGGGTTTTGTGTTAGAGGTAGGAAACTCTCTTCGTAGGTCGTTTTTGTTGGCCGATGAAGCTTTGGCAGATGAAAGCAGTGTGAGTAGTTCTTCCGGGACTACAGCTCTTACTGCTCTTGTCCTCGGAAGCCTTCTTATGGTGGCAAATGTCGGGGATTGCCGAGCCGTTCTATGCCGAGGAGGAGAGCCGATAGACATGTCAACCGATCACAGGCCAACTCATCCCTCTGAAAGGAAACGCGTAGAGGAGGCAGGCGGCTTCATCGACGACAGCTACCTCAATGGCATTTTATCCGTGACAAGAGCATTAGGCGACTGGGACCTGAAATTCCCACACGGGTCCCGTTCGCCTCTAATTTCCGAACCGGAGATCAAGCACTCAGTCTTAACCGAGAAGGACGAGTTTTTGATTATGGCCTGCGACGGAATCTGGGATGTTATGTCCAGTCAGCAGGCCGTCACTTTAGTCCGGCGTGGGCTCCGCCGACACGGCAAGGTGGATAAGTGCGCAAGGGACCTCGTTAGGGAGGCTTTGAGGAGGAATGCGTTTGATAATCTCACGGTAATTGTCGTGTGCTTCTTGAAGATCGATCTAGACGATCTTTCCCCACCTCCGAAGCGGAAAATGAGATGTTGGAGCCTGTCTATTTTGTAG 1134 49.56 MVAEAEVVVCKKCLTVSEVYRLGNGNDYDDHCRVVRDFGTPSISRVRTSESVSLSEMMDCKSKEKVSDSVLVTSDLQYFPTICSGSYADIGPRPYMEDKHVQMDHLSSHVGGLIKFAQPSAFYAVFDGHGGADAANFIAKNAKRCFFEDVNFPNSREVDEGFVLEVGNSLRRSFLLADEALADESSVSSSSGTTALTALVLGSLLMVANVGDCRAVLCRGGEPIDMSTDHRPTHPSERKRVEEAGGFIDDSYLNGILSVTRALGDWDLKFPHGSRSPLISEPEIKHSVLTEKDEFLIMACDGIWDVMSSQQAVTLVRRGLRRHGKVDKCARDLVREALRRNAFDNLTVIVVCFLKIDLDDLSPPPKRKMRCWSLSIL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49739424 49741088 + Bda021490.1 Bda05g00413 6725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00413 377 CDD PP2Cc 84 353 IPR001932 -
Bda05g00413 377 Pfam Protein phosphatase 2C 95 345 IPR001932 -
Bda05g00413 377 Gene3D - 62 358 IPR036457 -
Bda05g00413 377 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Bda05g00413 377 SMART PP2C_4 73 351 IPR001932 -
Bda05g00413 377 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Bda05g00413 377 ProSiteProfiles PPM-type phosphatase domain profile. 83 353 IPR001932 -
Bda05g00413 377 SUPERFAMILY PP2C-like 76 353 IPR036457 -
Bda05g00413 377 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 368 - -
Bda05g00413 377 SMART PP2C_SIG_2 98 353 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00698 Bda05g00413 CCT
Bda04g00698 Bda05g00413 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00413 Bda-Chr5:49739424 Bda13g00231 Bda-Chr13:2890588 7.40E-105 dispersed
Bda12g00106 Bda-Chr12:854926 Bda05g00413 Bda-Chr5:49739424 0 wgd
Bda04g00698 Bda-Chr4:55785709 Bda05g00413 Bda-Chr5:49739424 4.53E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00413 K14803 - tcc:18613771 451.055