Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00421 ATGGTGCTCATGGCCCCTTCAATGCCATCTGAACAGCATACCCCACTGCCGTTGTCTGAGATGCCATTACAAGATGTTTCTCCTCATGATTCCAGAAGTGGAGATACAAAAACAATTTCTTCAGTTAAACATGGAACTATGAACAGTTCACCAGCTTATTCAGAACTCGTAGACTGTGCTGCAGTGAAAAGCAAGATGAATAACTTTGATTTGAATGACATATATATTGATTCTGATGATGGAATAGAGGATGTGGAGACACTTCCTGTACATTTGGGGACAAGTTCCCTAGAGTCTCCTTGGGCCGGACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCGCCTTCGAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGTATTGTTATTAAACTATTTGGAAAAGATCCCAGTGATTTCCCTCTTGACCTACGAGCACAGGTTCTTGACTGGTTGGCACATTGTCCTACAGACATGGAGAGCTACATTAAGCCTGGTTGTGTGGTTCTTACCATCTATCTACGTCAGACAGAGGATGCTTGGGAGGAACTTTGCTATGACATATGTTGTAGCTTGAACAGGCTCCTCCAAGGCTCAGATGATACTTTCTGGAGAACGGGATGGATTTATGCCAGAATTCAGCATCATTTAGCATTTGCTTTTCATGGTCAAGTTATGGTGGATACGTCATTATCTCTCAGAAGCTCCCATTATTGTAATATTGTCAGTGTAAAACCTATCGCCGTATCTGCTTCAGAAAGGATTCAGTTTTCAGTTAGAGGCTTGAACTTGAAGCGGCCTGGAACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGAAACTCAAGAATCAACTGACATTGATTCAGTTAAGGAGCATGATGATCATAATGAGCTGGAGTTCATCAGCTTTTCTTGTTCTATTCCGGTTGTAAATGGAAGGGGCTTCATTGAGGTTGAAGATCTTGGATTCAGCAGCAGCTTCTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGATATTTGTGTTCTTGAGGCTACTCTGGAGCTGACTGATACGAGCTCAGACGCAACGGGAGCAGTGACGGAAGCAAGGAGGCAAGCCATGGATTTTATTCATGAAATGGGGTGGCTTCTTCATAGGAAACAATTGAACTCTAGATTGAAGATTATGAATCAAAATGCAGATACTTACCCTTTGGATCGGTTCAAGTGGCTTATGGATTTCTCGATGAACCGTGATTGGTGTGCTGTAGTGAGGAAATTATTAAATATTCTGTTTGATGGAATTGTGAGTAATGGAGATCACCCCTCTCTGAATGAGGCCTTATTCGAGATGAGTCTTCTACACCGGGCTGTAAGGAGAAGCAGTAAGTCGCTTGTGGAGCTCCTTTTGAGATTCAAGCCCCAAAAAGTGACAACAGAAAACGAAGTGGTTGATGGATTTTTGTTTAGGCCTGATGCTGCAGGACCTGCCGGCTTGACCCCACTTCACATCGCAGCTGCTAAAGATGGGTCTGAGGATGTTCTTGATGCATTAACCGACGACCCTGGAATGGTTGGAATTGAAGCATGGAGGAATGCTCGGGACAGCACGGGGTCCACACCTGAAGCCTACGCACGCTTACGTGGCCATTTTTCGTACATCCACCTCATCCAGAGGAAAATCAACAAGAGAGCTTCCTCTGGGCATGTGGTTCTCGATATTCCTAGTGTTGTTCACTCGGATCATAGCACAAATGATAAACAAATGGACAACTTGGGCAGCAGCGCCTTTGAGATCAGACTGACCCAGCCGAGACCCAACTGCAGAGTCTGTGATAAGAAACTCAGCTATGGAAAATTGAGGCCATCACTGGTTTACCGGCCTGCAATGTTGTCGATGGTGGCTATAGCAGCCGTCTGTGTGTGTGTGGCACTTCTGTTCAAAAGCTCGCCGGAAGTCCTTTATGTATTCCGGCCGTTCAGGTGGGAGTTGTTAGATTATGGAACGTGCTGA 2049 44.9 MVLMAPSMPSEQHTPLPLSEMPLQDVSPHDSRSGDTKTISSVKHGTMNSSPAYSELVDCAAVKSKMNNFDLNDIYIDSDDGIEDVETLPVHLGTSSLESPWAGQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKDPSDFPLDLRAQVLDWLAHCPTDMESYIKPGCVVLTIYLRQTEDAWEELCYDICCSLNRLLQGSDDTFWRTGWIYARIQHHLAFAFHGQVMVDTSLSLRSSHYCNIVSVKPIAVSASERIQFSVRGLNLKRPGTRLLCALEGKYLTEKETQESTDIDSVKEHDDHNELEFISFSCSIPVVNGRGFIEVEDLGFSSSFFPFIVAEDDVCSDICVLEATLELTDTSSDATGAVTEARRQAMDFIHEMGWLLHRKQLNSRLKIMNQNADTYPLDRFKWLMDFSMNRDWCAVVRKLLNILFDGIVSNGDHPSLNEALFEMSLLHRAVRRSSKSLVELLLRFKPQKVTTENEVVDGFLFRPDAAGPAGLTPLHIAAAKDGSEDVLDALTDDPGMVGIEAWRNARDSTGSTPEAYARLRGHFSYIHLIQRKINKRASSGHVVLDIPSVVHSDHSTNDKQMDNLGSSAFEIRLTQPRPNCRVCDKKLSYGKLRPSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTC 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49870774 49874585 - Bda021499.1 Bda05g00421 6733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00421 682 SUPERFAMILY Ankyrin repeat 461 569 IPR036770 -
Bda05g00421 682 MobiDBLite consensus disorder prediction 33 47 - -
Bda05g00421 682 MobiDBLite consensus disorder prediction 1 47 - -
Bda05g00421 682 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 681 IPR044817 GO:0003677
Bda05g00421 682 MobiDBLite consensus disorder prediction 95 135 - -
Bda05g00421 682 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 39 681 - -
Bda05g00421 682 Gene3D - 432 582 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00421 - - - jre:108999895 858.211
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00421 Bda-Chr5:49870774 Bda11g00488 Bda-Chr11:5154402 0 dispersed
Bda12g00119 Bda-Chr12:1052667 Bda05g00421 Bda-Chr5:49870774 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50670 65.9 4.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00421 Bda_Chr05 FPKM 8.610526 5.41874 4.679453 7.189933 7.511624 6.151201 12.522665 5.515432 5.217341