Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00426 ATGGCAGCCGTCGCCACAACAAGCGTTGTTCCAGCGAATAGGCGGCGTCCCCCCGCCGCTGCTGAAGATAAGGTGGAGTTCGAGACAACGGAGGGGGTCGAGCCGATTATGAGTTTTGATCAGATGGGTATTAAGGACGATCTGCTTCGTGGGATATATGCCTATGGCTTTGAGAAACCCTCCGCCATCCAACAGAGAGCCGTCAGGCCAATCATTGAGGGTCGGGATGTAATAGCACAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTCACCGTTTGCCAAATCGTGGATACATCAAGTAGAGAGGTACAAGCCTTAATATTGTCTCCTACAAGGGAATTGGCCACTCAGACGGAAAAGGTCATATTGACCGTTGGCGATTTCATAAATATACAAGTGCATTCATGCATTGGAGGGAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAATATGGTGTTCATGTGGTTTCTGGAACTCCTGGAAGAGTGTGTGATATGATCAAGAGGAGAACACTGCGTACTAGAAACATTAAATTACTTGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATTTATGACGTGTACAGATATCTACCGCCAGAGCTTCAGGTTGTTTTGATTTCTGCCACTCTTCCTCATGAAATTTTGGAGATTACGAACAAGTTTATGACAGATCCTGTGAGGATACTTGTTAAACGTGACGAGTTAACTTTGGAGGGTATTAAGCAGTTTTTCGTTGCAGTTGAAAGAGAAGAGTGGAAATTTGATACTCTATGTGATCTATATGATACTCTAACCATTACACAGGCTGTTATTTTTTGCAATACGAAGAGAAAGGTGGAATGGTTGACAGAAAAGATGCGCAGTAATAACTTCACTGTTTCTCAAATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCTATTATGGGGGATTTCAGATCTGGTACAACTCGCGTTCTCATAACAACAGATGTTTGGGCTCGAGGGATTGATGTTTCGTTGGTTATCAACTATGACCTTCCAAATAATCGAGAGCTTTATATTCACCGAATTGGTCGGTCTGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGACATCAAGATTCTGAGGGACATAGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGCAGATTTGATA 1221 43.33 MAAVATTSVVPANRRRPPAAAEDKVEFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELATQTEKVILTVGDFINIQVHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQKERDAIMGDFRSGTTRVLITTDVWARGIDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 49979059 49983108 - Bda033633 Bda05g00426 6738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00426 407 CDD SF2_C_DEAD 250 377 - -
Bda05g00426 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 400 - -
Bda05g00426 407 Gene3D - 242 407 IPR027417 -
Bda05g00426 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Bda05g00426 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 407 IPR001650 -
Bda05g00426 407 Pfam Helicase conserved C-terminal domain 263 368 IPR001650 -
Bda05g00426 407 SMART helicmild6 290 368 IPR001650 -
Bda05g00426 407 PANTHER BNAA01G25900D PROTEIN 21 400 - -
Bda05g00426 407 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Bda05g00426 407 Gene3D - 21 241 IPR027417 -
Bda05g00426 407 SMART ultradead3 56 253 IPR014001 -
Bda05g00426 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Bda05g00426 407 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Bda05g00426 407 MobiDBLite consensus disorder prediction 1 21 - -
Bda05g00426 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 390 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00426 Bda-Chr5:49979059 Bda13g01595 Bda-Chr13:39516012 5.24E-122 dispersed
Bda05g01202 Bda-Chr5:60007131 Bda05g00426 Bda-Chr5:49979059 3.29E-59 dispersed
Bda11g00241 Bda-Chr11:2883703 Bda05g00426 Bda-Chr5:49979059 3.09E-51 dispersed
Bda05g00426 Bda-Chr5:49979059 Bda10g00864 Bda-Chr10:43138489 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00426 K13025 - csv:101222664 751.125