Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00458 ATGAGATGCTTGATAACTGGAACTGAATTTTCTTTATACAACTTGTTGGAATTTGCTTCTGATAATAACGTTGAAGGATTTAAACGATTGATAGATTGTGATGCATCTTCCATTAATAAATCTGGACTGTGGTATGTCCGTCATAGTGGCTCAAAGCAGGTTGTTCAAGAGGATAGAACCCCACTAATGGTTGCTGCTACCTATGGTAGTGTTAATGTCCTGAAACTTTTGCTTTCATTTCCTGAGATTGATGTAAATCTCTCATCTGGACTGGATAAAAGCACTGCCCTTCATTGTGCTGCTTCTGGTGGATCTATCAGCATTTTTGAGGCTGTTAATATTCTTTTATCTGCGGGCGCGGATCCAAATTCGGTTGATGCAAATGGTTATCGCCCTGTAGATGTCATTTATGTACATCCAAAGCTGCATAACATGAAGGTCAAGCTTGAGGAACTATTAAGTAGTGATTGTCATCCTGATGAATTGACCTCCTTGCAATTATCCTTCATTACCTCATGTTCTTTATCACCTGCTCTCACTTCAGATCCAGAGAAGGAATTTTTATCTTTGGAGTCAACATCTTCTCTTGTTAGGAAAAGTACTGATGAGTCTGTTAATTCTACAGTGGAGAAGAAAGAATATCTAATTGATCCTTCTCTTCCTGACATCAAAAATAGTATTTATGCAACTGATGAGTTTCGCATGTTTTCCTTCAAGGTGAGACCTTGTTCACGAGCATATTCACATGATTGGACTGATTGTCCTTTTGTTCACCCTGGGGAGAATGCTCGCAGAAGGGATCCAAGAAAGTTTCACTACAGTTGTGTACCTTGTCCAGATTTTCGAAAGGGTGCTTGTAGGCGTGGAGACATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACACGCCTATGCAAGGATGGGGCAAGTTGTGATAGACGGGTTTGTTTTTTTGCCCATGCAACTGAGGAGCTCAGGCCGTTGTATGTTTCTACTGGTTCTGCTGTTCCTTCGCCATGGTCGTCAACATCAGCACCTAATGTTATGGACATGGCCGCCGCATTAAGTCTCTTTCCTAGATCTCCTTCATCATTATCAGTCATGTCTCCTCCATTTTCTCAGCCAATGTCTCCTCCATTTTCTCAGCCAATGTCGCCTTCTCCATTTTCTCAGTCAATGTCTCCAGCCGCAACAGCCTGGGGTCAGCCAAATGTACCCACTCTTGATCTCCCTGGAAGCAGCTTACAATCCAGTCGCCTGAGAACTTCTTTTAGTGCCAGAGACATGTCACTGGAAGATTTAAATAGGTTGATGAATCATGACTCAGAGAAACAGCTTGTGAGTGACGAGAATTTTTTCTCGCAGCTCCGCCCTAGTTCTGTCTGTCTTAGCCTCTCTGGCAGACCTAAAACTGTAACTCCTTCCAATCTGGAAGAGCTTTTCTTTTCTGAGATATCCTCATCAACTCGATTTTCTGATCCTGGAGCAGCCTCTGTGTTTTCTCCAACTTACAAATCGGCTGTTTTGTCACAATTTCAACAACGGCAGAGCATGTTGTCACACATTAATACTAATCTTCTGTCTCCTAAATTTGTTGAACTCCCATTGCAGCATGCCTCTTTGGGAGCCTTGTCTCCTGGACGGATGTCGCCAAGAAATGCTGATCTGATATCTCCTATGGGCTCTAGACTTTCTCCATTTGCTCATGGCGAGAAGCATCAAAATCTTCATTGCTTGAGCTCTAGGGACCTTGGTTCCAACATTCCTGTCTCAAATGGTTCCCCAGTAAAGTTTTGGTCGAAATGGGGTTCTTCTATGGGAAAAGCGGATTGGTCAGTTCATGGGGATGAACGGGCTCGTATGAGAGGATCATCGTTACTTGAGCTCGGTAATGATGTGGAGGAGTCTGATTTCTCATGGGTCCAAACCCTTGTCAAAGAATCTCCACCAGAAATTATGAGAGACAAGTTAACAGTTCCAGTCCCAGGCGGTGCAGTGCCCTGTGAGGAGTTGACTACTAATTCTCAATTTGAATCCATTGATCATTTGGTTTTAGGATCTTTGCTTGAGCAGATGCCAGCTTGA 2109 43.34 MRCLITGTEFSLYNLLEFASDNNVEGFKRLIDCDASSINKSGLWYVRHSGSKQVVQEDRTPLMVAATYGSVNVLKLLLSFPEIDVNLSSGLDKSTALHCAASGGSISIFEAVNILLSAGADPNSVDANGYRPVDVIYVHPKLHNMKVKLEELLSSDCHPDELTSLQLSFITSCSLSPALTSDPEKEFLSLESTSSLVRKSTDESVNSTVEKKEYLIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGASCDRRVCFFAHATEELRPLYVSTGSAVPSPWSSTSAPNVMDMAAALSLFPRSPSSLSVMSPPFSQPMSPPFSQPMSPSPFSQSMSPAATAWGQPNVPTLDLPGSSLQSSRLRTSFSARDMSLEDLNRLMNHDSEKQLVSDENFFSQLRPSSVCLSLSGRPKTVTPSNLEELFFSEISSSTRFSDPGAASVFSPTYKSAVLSQFQQRQSMLSHINTNLLSPKFVELPLQHASLGALSPGRMSPRNADLISPMGSRLSPFAHGEKHQNLHCLSSRDLGSNIPVSNGSPVKFWSKWGSSMGKADWSVHGDERARMRGSSLLELGNDVEESDFSWVQTLVKESPPEIMRDKLTVPVPGGAVPCEELTTNSQFESIDHLVLGSLLEQMPA 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50910532 50912640 + Bda021547.1 Bda05g00458 6770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00458 702 SUPERFAMILY Ankyrin repeat 15 139 IPR036770 -
Bda05g00458 702 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Bda05g00458 702 SMART ANK_2a 11 40 IPR002110 GO:0005515
Bda05g00458 702 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bda05g00458 702 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bda05g00458 702 ProSiteProfiles Ankyrin repeat region circular profile. 57 79 - -
Bda05g00458 702 ProSiteProfiles Ankyrin repeat profile. 57 79 IPR002110 GO:0005515
Bda05g00458 702 Gene3D - 272 335 - -
Bda05g00458 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bda05g00458 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bda05g00458 702 PANTHER UNKEMPT FAMILY MEMBER 5 700 IPR045234 -
Bda05g00458 702 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 5 700 - -
Bda05g00458 702 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Bda05g00458 702 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Bda05g00458 702 MobiDBLite consensus disorder prediction 377 404 - -
Bda05g00458 702 Gene3D - 12 153 IPR036770 -
Bda05g00458 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Bda05g00458 702 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00458 Bda10g00722 CCT
Bda05g00458 Bda10g00722 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00458 Bda-Chr5:50910532 Bda12g00153 Bda-Chr12:1353204 0 dispersed
Bda05g00457 Bda-Chr5:50858516 Bda05g00458 Bda-Chr5:50910532 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15879 PF12796 Ank_2 1.90E-10 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00458 - - zju:107417606 861.677