Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00494 TTGGTGGAGGAATTGAACAGGGCGAGCGAAGAAAACAAGAGATTGACTGAACTGCTAACAGTCATGTACGAGAATTACAATGCATTGAAAACCCAGTTGGTAGATTTTATGAGCAAAAACTCGGACAAGGACCTTAGCCCGTCGAAGAAAAGAAAATCAGAAAGCAGCGACAACAACAACATCAGCAATATTGTCGGAATTGACGCAAATTCCGACGCGAGCTCCAGCGACGACGGATCATGCAAGAAACCCAGAGAAGAAACAATCAAATCCAGAATCACAAAAGCTTATTACAAGACTGAACCTTCTGATACGAGCCTGATTGTGAAAGATGGGTATCAATGGAGGAAATATGGGCAAAAAGTGACGAGGGATAATCCTTGCCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTAGCTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTGGAAGATCAGTCTGTTTTGGTAGCAACTTATGAAGGAGAACACAACCATCCAAACTCTTCTCCAATGGATGTGAACTCAACCTCATCACGACGTCAGGTCCCTCTTTCGAGCTCTCTCGGATCATCAGGACCGTCCATCAATCTAGACCTCGTGAAATCGAAGACCATTAACGAAGCGAAAGCTTTGGAAGGCAGAACTGCTACGCCTGAAATGCAGCAGTTTCTGGTAGAGCAGATGGCTTCTTCTTTGACAAAAGATCCTAACTTCACGGCAGCATTGGCGGCAGCCATATCTGGAAGAATGTTTTCGAAATAA 768 44.14 LVEELNRASEENKRLTELLTVMYENYNALKTQLVDFMSKNSDKDLSPSKKRKSESSDNNNISNIVGIDANSDASSSDDGSCKKPREETIKSRITKAYYKTEPSDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPNSSPMDVNSTSSRRQVPLSSSLGSSGPSINLDLVKSKTINEAKALEGRTATPEMQQFLVEQMASSLTKDPNFTAALAAAISGRMFSK 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51733979 51734922 + Bda021590.1 Bda05g00494 6806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00494 255 MobiDBLite consensus disorder prediction 164 192 - -
Bda05g00494 255 Gene3D WRKY domain 94 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00494 255 Coils Coil 5 25 - -
Bda05g00494 255 Pfam WRKY DNA -binding domain 110 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00494 255 ProSiteProfiles WRKY domain profile. 104 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00494 255 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 254 IPR044810 GO:0003700
Bda05g00494 255 SMART WRKY_cls 109 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00494 255 MobiDBLite consensus disorder prediction 57 77 - -
Bda05g00494 255 MobiDBLite consensus disorder prediction 39 86 - -
Bda05g00494 255 SUPERFAMILY WRKY DNA-binding domain 106 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00494 255 MobiDBLite consensus disorder prediction 42 56 - -
Bda05g00494 255 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 1 254 - -
Bda05g00494 255 MobiDBLite consensus disorder prediction 161 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01012 Bda-Chr1:43678128 Bda05g00494 Bda-Chr5:51733979 2.29E-58 dispersed
Bda03g00095 Bda-Chr3:899767 Bda05g00494 Bda-Chr5:51733979 2.49E-62 dispersed
Bda05g00494 Bda-Chr5:51733979 Bda05g00712 Bda-Chr5:55382542 2.47E-30 dispersed
Bda12g00568 Bda-Chr12:9895955 Bda05g00494 Bda-Chr5:51733979 4.62E-89 wgd
Bda04g00793 Bda-Chr4:57824886 Bda05g00494 Bda-Chr5:51733979 1.31E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15883 PF03106 WRKY 3.10E-23 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00494 - - rcu:8279744 351.288