Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00496 ATGGCGGATCTCAAAGAACGATTGCTTCCTGCTAGAGCTGCATCCGCCATTACCCTTGGGGAGTCGTCTCATCGACCATCTTCCCATGGAAGGCCGCCTTTTCAAGGGCTGGATCTATCTGGATTGAAGAAACGAGGTCAAGGAGCTCGATCTTGGATCCAAGTTGACTTATCTGGAAACTCTCAATGTATTGAGGTTGATAAGTTTACCATGATGCAACGTTGCGATCTTCCTGCTCGTGATTTGCGTCTGCTAGATCCTCTATTTTTCTATCCAACTACAATACTTGGCAGGGAGAAAGCTATTGTCATTAATCTGGAGCAAATTCGATGCATTATCACTGCAGACGAGGTTCTGTTGTTGAATTCACTTGATAGTTATGTTCTGCAATATGCAGAAGAACTTCAACGGCGACTAATAGCTAATGGGACTGGTGGGGTTTGGCAATCAGAAGGTCTTGACTTGAACTGGAGGAGGGGAGGTAGCAACTTTGATAATGCGTGTAGTAGCACATCACCTGATTACTTGCCGTTTGAGTTTAGGGCTCTAGAAGTTGTTCTTGAAACTGCTTGTACGTTTCTTGATTCCCAGGCAGCAGAATTAGAATTTGAAGCACACCCATTGTTAGATGAACTCATATCAAAGATCAGTACATTAAATTTGGAGCGTGCACGGAGATTGAAAAGCAGACTTGTTGCCTTGACTCGTAGAGTTCAGAAAGTTAGGGACGAAATGGAGCAACTCATGAATGATGATGGCGATATGGCTGAAATGTATCTCACGAAAAAGAAAAGGCTGATGGAGGCTTCATTTTTCGGTGGTCAGTCTTTGATGCCAAACAAATCGACAGATGGAGCTTCAGCTTCTGCGCCTGCTTCACCTGTATCTGCCCCTCCTGGAGCCAGAAAGCTGGAGAAGAGCTTTAGTATTGCTAGGAGTCGACATGAGAGCGCGAGGAGTTCAGAAAGTGCTACTGATAGTATAGAAGAGCTTGAGAAGTTGTTGGAAGCATATTTTGTTGTCATTGATAGCACCCTTAATAAATTGACATCATTGAAAGAGTACATCGATGACACTGAAGATTTAATCAACATTCAGCTGGATAATGTAAGGAACCAGCTGATCCAGTTCGAGCTACTACTCACAACGGCAACCTTCGTGGTTGCTATCTTCGGGGTGGTTGCAGGGATCTTCGGTATGAACTTCTCAATACCGCTTTTTGACGACGGAGGTGCATTTAAGTGGGTTCTTGTAATTACAGGAGTAACTGGTATATGCATTTTTTCTGCGTTTCTTTGGTTTTTCAAAAATAGAAGACTCATGCCATGGTAG 1332 43.62 MADLKERLLPARAASAITLGESSHRPSSHGRPPFQGLDLSGLKKRGQGARSWIQVDLSGNSQCIEVDKFTMMQRCDLPARDLRLLDPLFFYPTTILGREKAIVINLEQIRCIITADEVLLLNSLDSYVLQYAEELQRRLIANGTGGVWQSEGLDLNWRRGGSNFDNACSSTSPDYLPFEFRALEVVLETACTFLDSQAAELEFEAHPLLDELISKISTLNLERARRLKSRLVALTRRVQKVRDEMEQLMNDDGDMAEMYLTKKKRLMEASFFGGQSLMPNKSTDGASASAPASPVSAPPGARKLEKSFSIARSRHESARSSESATDSIEELEKLLEAYFVVIDSTLNKLTSLKEYIDDTEDLINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFSIPLFDDGGAFKWVLVITGVTGICIFSAFLWFFKNRRLMPW 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 51751997 51754323 - Bda021594.1 Bda05g00496 6808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00496 443 Pfam CorA-like Mg2+ transporter protein 333 431 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bda05g00496 443 Gene3D Magnesium transport protein CorA, transmembrane region 131 374 - -
Bda05g00496 443 MobiDBLite consensus disorder prediction 282 302 - -
Bda05g00496 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 432 IPR045863 -
Bda05g00496 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Bda05g00496 443 Gene3D - 37 123 - -
Bda05g00496 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Bda05g00496 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 442 IPR039204 -
Bda05g00496 443 Coils Coil 224 251 - -
Bda05g00496 443 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00496 K16075 MRS2, MFM1; magnesium transporter - zju:107406606 670.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00496 Bda-Chr5:51751997 Bda11g01176 Bda-Chr11:12156585 3.20E-140 dispersed
Bda12g00562 Bda-Chr12:9654647 Bda05g00496 Bda-Chr5:51751997 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00562 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.8e-198 688.7
Bda05g00496 . 1 442 MRS2 Gene Family AT1G16010 76.7 4.1e-182 634.4
Bda11g01176 . 36 420 MRS2 Gene Family AT1G16010 57.0 1.9e-115 412.9
Bda08g00266 . 6 415 MRS2 Gene Family AT5G64560 71.0 3.5e-150 528.1
Bda06g01175 . 15 502 MRS2 Gene Family AT3G19640 61.8 6.1e-147 517.7
Bda06g01174 . 15 502 MRS2 Gene Family AT3G19640 62.1 7.5e-145 510.8
Bda06g01157 . 39 501 MRS2 Gene Family AT3G19640 64.5 7.5e-145 510.8
Bda06g01165 . 39 499 MRS2 Gene Family AT3G19640 64.6 1.1e-143 506.9
Bda11g01176 . 11 420 MRS2 Gene Family AT2G03620 64.3 7.5e-133 470.7
Bda12g00562 . 9 443 MRS2 Gene Family AT2G03620 52.5 8.0e-111 397.5
Bda05g00496 . 6 442 MRS2 Gene Family AT2G03620 50.3 1.7e-105 379.8
Bda08g00266 . 6 357 MRS2 Gene Family AT5G09690 68.0 1.2e-119 426.4
Bda12g00562 . 50 379 MRS2 Gene Family AT5G09690 51.7 3.2e-75 278.9
Bda08g00266 . 26 293 MRS2 Gene Family AT5G09720 67.6 1.1e-90 330.1
Bda12g00562 . 1 443 MRS2 Gene Family AT1G80900 82.4 7.7e-197 683.3
Bda05g00496 . 1 442 MRS2 Gene Family AT1G80900 75.8 1.5e-179 625.9
Bda11g01176 . 36 420 MRS2 Gene Family AT1G80900 56.6 7.4e-115 411.0
Bda09g00228 . 41 441 MRS2 Gene Family AT5G22830 70.7 5.1e-151 531.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00496 Bda_Chr05 FPKM 22.680185 22.455505 10.22307 9.572252 25.962025 24.626675 25.604456 9.419035 9.491725