Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g00535 | ATGGAAGATACGATACTCCGTTCCATTCCCTGTTCAGGACATTGGACACAGGCCCATTTCGACGATTTCTATCAGAAAAACTTCGTCGGTTCTTCGATAGCAAGAGGCGGTCCGAGGGAGCCTTGGCATGACATCCATTGTCTCCTGGAAGGCCCCGTTGCTTGGGACGTGCTGTTTAACTTCGAGCAAAGATGGAGAAAGCAGGGCGGAAAAGACGAGCTCATATCAATTCGAGATCTTGAGGACGTTATAATTCCACCATCTCCGGTTATGTTTCCGTCTGATCACGAAACTTGGAATGTTCAATTGTTTAAATCCCTCGATGGGGGGGCTGCATTTGGCTTTCCCCAAGCACCCGAAGATTGTGCTCGATCCGGACTCGTGAGTGGGAAAGATTACATTATCGACCGGAGCATTCAAGATGCTTACATTCACGCCATTCGTCGAGCAAAGAACTTCATCTACATCGAGAATCAGTATTTCCTCGGAAGCTCGTTTGCGTGGAGAGCTGACAGGATTAAGCCCGATGATATCGGAGCATTGCATCTGATCCCGAAGGAGATTTCGCTTAAAATTATAAGCAAGATAGAAGCCAAAGAGAGGTTCACTGCTTATATTGTTATTCCAATGTGGCCAGAGGGAATTCCAGAGAGTGCTTCAGTTCAGGCCATTCTGGATTGGCAGAGAAGGACAATGGATATGATGTATAGAGATATCATTCGAGCTCTGAACGAAAATGGAATTCGCGAGGATCCTCGCAACTACTTGACATTTTTTTGCCTCGGAAATCGCGAGACGAAGAAGGCCGGAGAATACGTTCCGGCGAAAGAACCTGATAAGAAGTCTGATTATTTGAAAGCTCAGCGGTCTAGGCGCTTCATGATCTATGTCCACTCAAAGATGATGATTGTTGATGATGAATACATAATCGTCGGATCGGCCAACATCAACCAAAGATCTATGGATGGTGGTAAGGACTCGGAAATAGCCATGGGAGCTTTTCAACCATACCACCTATCGACTCCTGCGCCTGCACGTGGTCAAATCCACGGCTTTCGCATGGCGTTGTGGTACGAGCATCTTGGCATGCTTCGACGACTCTTTCCTCGAGCCAGAGAGTGA | 1122 | 47.24 | MEDTILRSIPCSGHWTQAHFDDFYQKNFVGSSIARGGPREPWHDIHCLLEGPVAWDVLFNFEQRWRKQGGKDELISIRDLEDVIIPPSPVMFPSDHETWNVQLFKSLDGGAAFGFPQAPEDCARSGLVSGKDYIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWRADRIKPDDIGALHLIPKEISLKIISKIEAKERFTAYIVIPMWPEGIPESASVQAILDWQRRTMDMMYRDIIRALNENGIREDPRNYLTFFCLGNRETKKAGEYVPAKEPDKKSDYLKAQRSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGGKDSEIAMGAFQPYHLSTPAPARGQIHGFRMALWYEHLGMLRRLFPRARE | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 53046427 | 53047639 | - | Bda021652.1 | Bda05g00535 | 6847 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g00535 | 373 | Gene3D | Endonuclease Chain A | 117 | 335 | - | - | |
| Bda05g00535 | 373 | SUPERFAMILY | Phospholipase D/nuclease | 38 | 75 | - | - | |
| Bda05g00535 | 373 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 293 | 320 | IPR001736 | GO:0003824 | |
| Bda05g00535 | 373 | Pfam | Phospholipase D Active site motif | 294 | 320 | IPR001736 | GO:0003824 | |
| Bda05g00535 | 373 | PANTHER | PHOSPHOLIPASE D | 17 | 368 | IPR015679 | - | |
| Bda05g00535 | 373 | PANTHER | PHOSPHOLIPASE D | 17 | 368 | - | - | |
| Bda05g00535 | 373 | Gene3D | Endonuclease Chain A | 13 | 82 | - | - | |
| Bda05g00535 | 373 | SMART | pld_4 | 293 | 320 | IPR001736 | GO:0003824 | |
| Bda05g00535 | 373 | SUPERFAMILY | Phospholipase D/nuclease | 94 | 365 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda04g00828 | Bda05g00535 | CCT | |
| Bda04g00828 | Bda05g00535 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00535 | Bda-Chr5:53046427 | Bda09g01040 | Bda-Chr9:40567454 | 3.58E-162 | dispersed | |
| Bda10g00782 | Bda-Chr10:42226594 | Bda05g00535 | Bda-Chr5:53046427 | 0 | wgd | |
| Bda04g00828 | Bda-Chr4:58155369 | Bda05g00535 | Bda-Chr5:53046427 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g00535 | K01115 | - | gmx:100786410 | 596.275 |