Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00554 ATGAAGACAGTGTATAGGGCATTTGATGAGGTGCTTGGAATGGAGGTGGCTTGGAATCAGGTTAAGCTCAAAGAGGTCTTCCACTCGCCAGATTTATTGCAGAGGCTTTACTCTGAAGTACACCTCCTCAAAAACCTCAATCATTGCTCTATCATCCGCTTCCATACCCACTGGATCGATATCAATTCTAGATCCTTCAACTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAATATAGACGGAAATATCAACAAGTGGATATAAGGGCAGTGAAGAACTGGGCCCGTCAGATTCTATGCGGTTTGGCTTATCTTCATGAGCATGATCCTCCGGTGATCCATCGAGACCTCAAATGTGACAACATATTCGTCAATGGCCATCTCGGACAAGTCAAAATTGGCGATTTGGGTTTGGCTGCAATTCTTCAAGAATCCCAGCGAGCTCACAGTACTCCGGAATTTATGGCCCCGGAGCTATACGAAGAGGAATACAATGAGCTTGTTGATATATACTCGTTTGGAATGTGTGTCCTAGAGATGCTGACTTCAGAGTACCCTTACAGCGAGTGCTCTAACCCTGCCCAAATCTACAAAAAGGTCACCGCGGGAAATTGCCCCAAGCATTCCTACCGAATTCAAGATAAGGAACTGCAGCAATTCGTGACTCCCAGTGGAACAGTAATGGGGGCTCCTCCATTGAGAAGCAAGGACATGACCATCACTGGAACGATGAATTCAGAAGATGAGACAGTCAATCGAATAACATTACTTTCCGTTGACATCGTGAAAGATACTGCAATTGATGTGGCAAATGAGATGGTAAAAGAGCTGGAAATTTGTGGGTGGGAGCCAATGGAAATATCGAAGATGATAGAGGAGCAAATCACTTCTCTACTTCCTGGTTGGAAGCAGTTTGGTTCTCCACAATTTCATGATCAGCTCAGTTTCAATTACAAGAAGAAGAAGAAGATGTTAACATCACACCCTGCCTGTTATACTCAGATTCCTTGTGCTCGTCCTCCTCGTCTTCTCTCCCACCTCTCAACCCCTCGCACGAAACCCAGGATTTGCACGGACTGGGGGCGATTTCTAGCCATAACTGCTGGCTTCAAGGTACTTTCTCATATTTTGTTAAGCAGTCTTTTTTTTGCATCTTTTAACACATTAAAAAGCTCATTCTTCTTTGCAACTAATATGATTGAGATGGTGTTACATAAGAACGTATGA 1233 44.12 MKTVYRAFDEVLGMEVAWNQVKLKEVFHSPDLLQRLYSEVHLLKNLNHCSIIRFHTHWIDINSRSFNFITEMFTSGTLREYRRKYQQVDIRAVKNWARQILCGLAYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILQESQRAHSTPEFMAPELYEEEYNELVDIYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTAGNCPKHSYRIQDKELQQFVTPSGTVMGAPPLRSKDMTITGTMNSEDETVNRITLLSVDIVKDTAIDVANEMVKELEICGWEPMEISKMIEEQITSLLPGWKQFGSPQFHDQLSFNYKKKKKMLTSHPACYTQIPCARPPRLLSHLSTPRTKPRICTDWGRFLAITAGFKVLSHILLSSLFFASFNTLKSSFFFATNMIEMVLHKNV 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 53426529 53428257 - Bda021677.1 Bda05g00554 6866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00554 410 Pfam Protein kinase domain 3 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00554 410 SMART serkin_6 3 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00554 410 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda05g00554 410 SUPERFAMILY Protein kinase-like (PK-like) 2 223 IPR011009 -
Bda05g00554 410 Gene3D Phosphorylase Kinase; domain 1 1 71 - -
Bda05g00554 410 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 1 224 - -
Bda05g00554 410 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 232 324 - -
Bda05g00554 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Bda05g00554 410 Gene3D Transferase(Phosphotransferase) domain 1 73 226 - -
Bda05g00554 410 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 224 - -
Bda05g00554 410 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 232 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01439 Bda-Chr3:51799784 Bda05g00554 Bda-Chr5:53426529 0 dispersed
Bda05g00554 Bda-Chr5:53426529 Bda09g01550 Bda-Chr9:47104972 6.55E-148 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69628 PF00069 Pkinase 3.30E-39 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00554 K08867 - jre:108999446 467.618