Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00623 ATGTTTCATCCTCAAGGAGCTGCTAGACACACTTGTAGTCTCCTGGCAGTAACTTGTGGAAATAGTTTCCAAGAAAAGTATAATAAGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGAGTTAGTTTCTTCCAGCCGTTTAGAGGTCAAGATAATTATTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTATTTGGAAATCCCAAATGGAGGCAAACTGGCTGAAGCACTTCACTCCAAGGGCATTCCTTACGTGATATATTGGAAAAACACATTTTCACGATTTACTTCCTGCCACTTTCGTAATGCATTTCTTTCTGTGGTTCAAAGTTCATCCACCCTTGTATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTAGGATCTACTGTTTGCGAAGCTCCCATGATCGTAGTGAGAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGACCCGTCTAAGATATATGTAGAGCCTCCTGAGGTGGAGTTAGGAGAAGATGAAGATGGTTCTTCGCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGCAGCGAATCATCTACAGTGGATGAACGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAATCAATACTCATTCTGTCTTCTCTGTATCATATAGTGCACCTCCACCATCTCTTCAGGCGGGGACATTTTCTCGCGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATAAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCGCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCTGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCATGGGCGTTACAGGTCGTGTTGAGGCAGTTGGCACCAGACGTCACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGCCTGCTTTTTTTCTGTTCTAGTCATAAAAAGGATATAGTTTTAGATGATTTGAGGTTTTCCAGCCCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATCGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCCACCTGCAAAATAAAAGAAGAAAATCAGGATGGTAGCGCAACGAATGGCTTTAAGACATCTGCTTTACCTGCTCGGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCGTAAAATTACACCCTTCTCTGGAATAACTGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTCCTTTCACTAAACAGATTACTGCATCGGCAACCCAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAATTATTTCCTTCAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACATGCTGTGAGGAGAACTTTCTGAAGGACGTGATGGAGTTTCTAATCCTTCGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTGAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGAGGCTTTCATGTAGGTAATGGTATCAATTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACAGGTGTTGGAAATACGTTGAAGAGACATTACGAGACGTATCTCTTAGAGTATGAGTTGGCTCATGACGATGTAGATGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCTCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGATGGGCTAGAATACATATGTCTGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAATGGGTACTCTCAG 2316 42.96 MFHPQGAARHTCSLLAVTCGNSFQEKYNKDVFEDQLRFPFPELVSSSRLEVKIIINPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGGKLAEALHSKGIPYVIYWKNTFSRFTSCHFRNAFLSVVQSSSTLVWDAFQLGLASFRIYCLRSSHDRSERLSEELEPHLLGDPSKIYVEPPEVELGEDEDGSSPPLPTINIHNDDVTTRFLICSESSTVDERLLGSLEDGLNALLNIEVINTHSVFSVSYSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRAILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVVLRQLAPDVTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHKKDIVLDDLRFSSPPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPTCKIKEENQDGSATNGFKTSALPARQRFRVAALRPIPRSHRRKITPFSGITEANGQNGGQIKANMPVVPFTKQITASATQRKTFSNLSQSKQIISFNPLPLKKHGCDRSSIHTCCEENFLKDVMEFLILRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICLHCSVANFKKKSQKIVNGYSQ 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54288403 54293316 - Bda033647 Bda05g00623 6935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00623 772 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Bda05g00623 772 SUPERFAMILY FYVE/PHD zinc finger 696 761 IPR011011 -
Bda05g00623 772 SUPERFAMILY ARID-like 596 708 IPR036431 GO:0003677
Bda05g00623 772 Gene3D - 587 703 IPR036431 GO:0003677
Bda05g00623 772 Pfam ARID/BRIGHT DNA binding domain 596 693 IPR001606 GO:0003677
Bda05g00623 772 CDD PHD_ARID4_like 703 754 - -
Bda05g00623 772 CDD ARID 596 693 - -
Bda05g00623 772 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 770 IPR042293 -
Bda05g00623 772 SMART ARID_2 590 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00623 - - - zju:107435388 1103.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00623 Bda10g00889 CCT
Bda05g00623 Bda10g00889 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00623 Bda-Chr5:54288403 Bda10g00892 Bda-Chr10:43404446 0 dispersed
Bda10g00889 Bda-Chr10:43343381 Bda05g00623 Bda-Chr5:54288403 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15895 PF01388 ARID 5.60E-14 CL0123 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00623 Bda_Chr05 FPKM 7.918009 9.300801 3.733639 3.887378 12.388371 11.63599 13.034151 9.789686 9.319552