Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00623 ATGTTTCATCCTCAAGGAGCTGCTAGACACACTTGTAGTCTCCTGGCAGTAACTTGTGGAAATAGTTTCCAAGAAAAGTATAATAAGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGAGTTAGTTTCTTCCAGCCGTTTAGAGGTCAAGATAATTATTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTATTTGGAAATCCCAAATGGAGGCAAACTGGCTGAAGCACTTCACTCCAAGGGCATTCCTTACGTGATATATTGGAAAAACACATTTTCACGATTTACTTCCTGCCACTTTCGTAATGCATTTCTTTCTGTGGTTCAAAGTTCATCCACCCTTGTATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTAGGATCTACTGTTTGCGAAGCTCCCATGATCGTAGTGAGAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGACCCGTCTAAGATATATGTAGAGCCTCCTGAGGTGGAGTTAGGAGAAGATGAAGATGGTTCTTCGCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGCAGCGAATCATCTACAGTGGATGAACGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAATCAATACTCATTCTGTCTTCTCTGTATCATATAGTGCACCTCCACCATCTCTTCAGGCGGGGACATTTTCTCGCGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATAAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCGCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCTGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCATGGGCGTTACAGGTCGTGTTGAGGCAGTTGGCACCAGACGTCACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGCCTGCTTTTTTTCTGTTCTAGTCATAAAAAGGATATAGTTTTAGATGATTTGAGGTTTTCCAGCCCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATCGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCCACCTGCAAAATAAAAGAAGAAAATCAGGATGGTAGCGCAACGAATGGCTTTAAGACATCTGCTTTACCTGCTCGGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCGTAAAATTACACCCTTCTCTGGAATAACTGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTCCTTTCACTAAACAGATTACTGCATCGGCAACCCAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAATTATTTCCTTCAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACATGCTGTGAGGAGAACTTTCTGAAGGACGTGATGGAGTTTCTAATCCTTCGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTGAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGAGGCTTTCATGTAGGTAATGGTATCAATTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACAGGTGTTGGAAATACGTTGAAGAGACATTACGAGACGTATCTCTTAGAGTATGAGTTGGCTCATGACGATGTAGATGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCTCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGATGGGCTAGAATACATATGTCTGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAATGGGTACTCTCAG 2316 42.96 MFHPQGAARHTCSLLAVTCGNSFQEKYNKDVFEDQLRFPFPELVSSSRLEVKIIINPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGGKLAEALHSKGIPYVIYWKNTFSRFTSCHFRNAFLSVVQSSSTLVWDAFQLGLASFRIYCLRSSHDRSERLSEELEPHLLGDPSKIYVEPPEVELGEDEDGSSPPLPTINIHNDDVTTRFLICSESSTVDERLLGSLEDGLNALLNIEVINTHSVFSVSYSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRAILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVVLRQLAPDVTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHKKDIVLDDLRFSSPPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPTCKIKEENQDGSATNGFKTSALPARQRFRVAALRPIPRSHRRKITPFSGITEANGQNGGQIKANMPVVPFTKQITASATQRKTFSNLSQSKQIISFNPLPLKKHGCDRSSIHTCCEENFLKDVMEFLILRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICLHCSVANFKKKSQKIVNGYSQ 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54288403 54293316 - Bda033647 Bda05g00623 6935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00623 772 ProSiteProfiles ARID domain profile. 593 697 IPR001606 GO:0003677
Bda05g00623 772 SUPERFAMILY FYVE/PHD zinc finger 696 761 IPR011011 -
Bda05g00623 772 SUPERFAMILY ARID-like 596 708 IPR036431 GO:0003677
Bda05g00623 772 Gene3D - 587 703 IPR036431 GO:0003677
Bda05g00623 772 Pfam ARID/BRIGHT DNA binding domain 596 693 IPR001606 GO:0003677
Bda05g00623 772 CDD PHD_ARID4_like 703 754 - -
Bda05g00623 772 CDD ARID 596 693 - -
Bda05g00623 772 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 770 IPR042293 -
Bda05g00623 772 SMART ARID_2 590 693 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00623 Bda10g00889 CCT
Bda05g00623 Bda10g00889 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00623 Bda-Chr5:54288403 Bda10g00892 Bda-Chr10:43404446 0 dispersed
Bda10g00889 Bda-Chr10:43343381 Bda05g00623 Bda-Chr5:54288403 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15895 PF01388 ARID 5.60E-14 CL0123 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00623 - - zju:107435388 1103.58