Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00625 ATGGATTCCATCAACTCCTTTAAGGGCTACGGCAAGGTGGACGAGGCTGAAGCTCGAGAATTCAAGCGGAAAACTCGCCGGCGTCTCGTCATTATGGTGGTTTCCGCTGTCGTTCTCGTTGGTTTAGTCGTCGGCGTAGTTGCCGGTACCGTGATTCACAAGCGAAATAGCTCATCTTCTTCCTCCTACTCACAGTCGAATCCGGCTGCGTATATTAAAACTATGTGCGAGGTGACGGAATATCCAACCTCTTGTATTGCTTCGCTAGAGGGATCGAATAGCACCGACCCAGAAGCTCTCTTCAAGTTTTCTCTGCAAATCGCCATGACTGAGCTCTCCAAGCTCTCTCACTTACCCACCCAGCACATCACTAGTGATACAAAGCTGAACGAGACCTTGTGGCTCTGCCAGACGCTCTTCGAAGACGCGATCGACAGCCTCAACGACTCCATATCAGCCATGGAAGTAGGCGAAGGAGAAAAGCTCTTGACTGAGTCAAAAATCAACGACTTAAAAACCTGGCTCAGCACCACCATTACCGACCAGGAAACTTGTTTGGACGGACTTGAAGATCTAAACTCCACGCTCGTCGACGAAATAAGAACTGCAATGAAAAACTCCACCGAGCTTGTGAGCAACAGTTTAGCCATTGTAACGAAAATCCTGGGTCTGTTGACCGATTTCAATATTCCGATTCACCGGAGGTTGCTCGGGTTTAGAGGAACCGATTCAGATTTTCCGGAATGGGTAAGCGCCGGAGATCGGAGGTTGCTGCAAGCTAACAATGTGACGGCCAATGTGATCGTGGCGAAGGACGGTAGCGGGAAGTACAAGACGATTTCAGATGCGGTGAAGGCTGTGCCGAGAAAGAGCAAAACGAGATTTATTATCTACGTTAAGGCAGGAACGTATAACGAGATTGTGAGGTTGGATAAGAACACTTGGAACGTTATGATGATCGGCGACGGAAAAACGAAGACCATTGTTACCGGTAGCTTGAACTTCGTCGATGGCACACCTACTTTCTCCACACCCACTTTCGCTGCCGTCGGGAAAGGATTTATCGCCAGAGACATGGGTTTCGTCAACACAGCAGGACCAGCCAAGCACCAGGCGGTGGCGTTCCGGTCAGGATCAGACCTTTCGGTATTCTCAGGGTGCTCATTCGTTGCCTACCAAGACACCCTCTACTCCCATTCCAATCGCCAATTCTACCGTGACTGTGACATAACTGGCACTGTCGACTTCATCTTCGGAAACGCGGCCGTCGTCTTCCAAAACTGCAACATCATGCCTAGACAGCCATTAAGCAACCAGTTTAACACCATCACAGCACAGGGAAAAACAGACCCTAATCAGAACACCGGCATTTCCATCCAAAAGTGCAATCTTGCAACTCTGCTTGGTAACGTTCTCTCTGCTCAAACTTACCTCGGGAGGCCATGGAAAGCATATTCCACGACAGTCATCATGCAGTCCAATATTGGGTCATTCCTCAACCCCTTGGGCTGGATTGCATGGGTCAGCAACGTCGAGCCGCCCAACACTATCTATTATGGCGAGTATCAGAACACTGGTCCTGGCTCGTCCGTCGCCAAAAGGGTTAAGTGGTCTGGTTATAAGCCAGCTCTGACAGCAGCTCAAGCCGTAAAATTTACAGTAAACTCTTTCATACAAGGTAGCGATTGGTTGCCGGCGACAAGTGTCAATTTTGATACATCGTTATGA 1728 49.25 MDSINSFKGYGKVDEAEAREFKRKTRRRLVIMVVSAVVLVGLVVGVVAGTVIHKRNSSSSSSYSQSNPAAYIKTMCEVTEYPTSCIASLEGSNSTDPEALFKFSLQIAMTELSKLSHLPTQHITSDTKLNETLWLCQTLFEDAIDSLNDSISAMEVGEGEKLLTESKINDLKTWLSTTITDQETCLDGLEDLNSTLVDEIRTAMKNSTELVSNSLAIVTKILGLLTDFNIPIHRRLLGFRGTDSDFPEWVSAGDRRLLQANNVTANVIVAKDGSGKYKTISDAVKAVPRKSKTRFIIYVKAGTYNEIVRLDKNTWNVMMIGDGKTKTIVTGSLNFVDGTPTFSTPTFAAVGKGFIARDMGFVNTAGPAKHQAVAFRSGSDLSVFSGCSFVAYQDTLYSHSNRQFYRDCDITGTVDFIFGNAAVVFQNCNIMPRQPLSNQFNTITAQGKTDPNQNTGISIQKCNLATLLGNVLSAQTYLGRPWKAYSTTVIMQSNIGSFLNPLGWIAWVSNVEPPNTIYYGEYQNTGPGSSVAKRVKWSGYKPALTAAQAVKFTVNSFIQGSDWLPATSVNFDTSL 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54329566 54331398 - Bda021749.1 Bda05g00625 6937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00625 575 CDD PMEI-like_3 74 221 - -
Bda05g00625 575 SMART PMEI_2 67 217 IPR006501 GO:0004857
Bda05g00625 575 Gene3D - 260 575 IPR012334 -
Bda05g00625 575 Pfam Pectinesterase 266 560 IPR000070 GO:0030599|GO:0042545
Bda05g00625 575 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Bda05g00625 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 222 IPR035513 -
Bda05g00625 575 Pfam Plant invertase/pectin methylesterase inhibitor 71 217 IPR006501 GO:0004857
Bda05g00625 575 PANTHER PECTINESTERASE 1-RELATED 8 572 - -
Bda05g00625 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 221 IPR006501 GO:0004857
Bda05g00625 575 SUPERFAMILY Pectin lyase-like 264 572 IPR011050 -
Bda05g00625 575 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Bda05g00625 575 PANTHER PECTINESTERASE 8 572 - -
Bda05g00625 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 222 IPR035513 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00625 Bda12g01041 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00625 Bda-Chr5:54329566 Bda12g00427 Bda-Chr12:5239006 6.30E-156 dispersed
Bda05g00625 Bda-Chr5:54329566 Bda05g00626 Bda-Chr5:54343379 0 tandem
Bda01g00808 Bda-Chr1:38112810 Bda05g00625 Bda-Chr5:54329566 3.77E-171 transposed
Bda07g00904 Bda-Chr7:10638223 Bda05g00625 Bda-Chr5:54329566 1.11E-177 transposed
Bda08g01087 Bda-Chr8:23953354 Bda05g00625 Bda-Chr5:54329566 2.27E-154 transposed
Bda11g00081 Bda-Chr11:968806 Bda05g00625 Bda-Chr5:54329566 5.72E-139 transposed
Bda15g00618 Bda-Chr15:9359230 Bda05g00625 Bda-Chr5:54329566 6.18E-46 transposed
Bda12g01041 Bda-Chr12:42213162 Bda05g00625 Bda-Chr5:54329566 2.59E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00625 - - pavi:110761660 796.964