Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00626 ATGGAAGTAGGCGAAGGAGAAAAGCTCCTGACTGAGTCAAAAATCAACGACTTAAAAACCTGGCTCAGCACCACCATTACCTACCAGGAAACTTGTTTGGACGGACTTGAAGATCTGAACTCCACGCTCGTCGACGAAATAAGAACTGCAATGAAAAACTCCACCGAGCTTGTAAGCAACAGTTTAGCCATTGTAACGAAAATCCTGGGTCTGTTGGCCGATCTCAACATTCCGATTCACCGGAGGTTGCTCGGGTTCAGAGGAACCGATTCAGATTTTCCGGAATGGGTAAGCGCCGGAGATCGGAGGTTGCTGCAAGCTAACAATGTGACGGCCAATGTGATCGTGGCGAAGGACGGGAGCGGGAAGTACAAGACGATTTCAGATGCGGTAAAGGCTGTGCCGAGAAAGAGCAAAACGAGATTTATTATATATGTTAAGGCAGGAACGTATAACGAGATTGTGAGACTGGATCAGAACACGTGGAACGTTATGATGATTGGAGACGGAAATACGAAGACCATTGTTACCGGTAGCTTGAACTTCGTCGATGGCACACCTACTTTCTCCACACCCACTTTCGCTGTCCTCGGGAACGGATTTATCGCCAGAGACATGGGTTTCGTCAACACAGCAGGACCAGCCAAGCAACAGGCGGTGGCGTTCCTGTCAGGATCAGACCTTTCGGTATTCTCAGGCTGCTCATTCGATGCCTACCAAGACACCCTCTACGTTCATTCCAATCGTCAATTCTACCGTGACTGTGACATTACCGGCACCGTCGACTTCATCTTCGGCAACGCTGCCGTCGTATTCCAAAACTGCAACATCATGCCTAGGCAGCCATTAAGCTACCAGTTCAACACCATCACAGCACAGGGCAAAACAGACCCTAATCAGAACACCGGCATTTCCATCCAAATGTGCAATCTTTCAACTCTGCTTGGTATCGTTCTTTCTGCTCAAACTTACCTCGGGAGGCCCTGGAAAGCATATTCCACGACAGTCATCATGCAGTCCAATATTGGGTCATTCCTCAACCCCTTGGGCTGGACTCCATGGGTCACAAACGTCAAGCCTCCCAGCACTATCTATTACGCTGAGTATCAGAACACTGGGCCTGGGTCGTCTGTCGCCGAAAGGGTCAAGTGGTCTGGTTATAAGCCAGCTCTGACAGCAGCTCAAGCCGGAAAATTTACAGTAAACTCTTTCATACAAGGTAGCGATTGGTTGCCGGCCACAAATGTCGAATTCGACGCATCGTTATGA 1269 49.09 MEVGEGEKLLTESKINDLKTWLSTTITYQETCLDGLEDLNSTLVDEIRTAMKNSTELVSNSLAIVTKILGLLADLNIPIHRRLLGFRGTDSDFPEWVSAGDRRLLQANNVTANVIVAKDGSGKYKTISDAVKAVPRKSKTRFIIYVKAGTYNEIVRLDQNTWNVMMIGDGNTKTIVTGSLNFVDGTPTFSTPTFAVLGNGFIARDMGFVNTAGPAKQQAVAFLSGSDLSVFSGCSFDAYQDTLYVHSNRQFYRDCDITGTVDFIFGNAAVVFQNCNIMPRQPLSYQFNTITAQGKTDPNQNTGISIQMCNLSTLLGIVLSAQTYLGRPWKAYSTTVIMQSNIGSFLNPLGWTPWVTNVKPPSTIYYAEYQNTGPGSSVAERVKWSGYKPALTAAQAGKFTVNSFIQGSDWLPATNVEFDASL 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54343379 54344752 - Bda021750.1 Bda05g00626 6938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00626 422 ProSitePatterns Pectinesterase signature 1. 138 157 IPR018040 -
Bda05g00626 422 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 68 IPR035513 -
Bda05g00626 422 PANTHER PECTINESTERASE 1-RELATED 5 419 - -
Bda05g00626 422 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 69 IPR035513 -
Bda05g00626 422 Pfam Pectinesterase 113 407 IPR000070 GO:0030599|GO:0042545
Bda05g00626 422 PANTHER PECTINESTERASE 5 419 - -
Bda05g00626 422 ProSitePatterns Pectinesterase signature 2. 257 266 IPR033131 -
Bda05g00626 422 SUPERFAMILY Pectin lyase-like 111 419 IPR011050 -
Bda05g00626 422 Gene3D - 107 422 IPR012334 -
Bda05g00626 422 Pfam Plant invertase/pectin methylesterase inhibitor 13 64 IPR006501 GO:0004857
Bda05g00626 422 CDD PMEI-like_3 2 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00626 Bda-Chr5:54343379 Bda07g00904 Bda-Chr7:10638223 7.67E-165 dispersed
Bda05g00625 Bda-Chr5:54329566 Bda05g00626 Bda-Chr5:54343379 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00626 - - pavi:110761660 648.277