Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g00634 | ATGCAATTAGTGTCGCATGGTAGTCATGGTGAAGATTCTTCCGAAAGTGAACCCATCTTGAGACAGTCCGAGCAAATATCATTAGAATCTGCATCTTCCTCTGAGATTACTTCAGTTGTAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGAAGAAACTTCTCATCTGGTGAATGTGGATCAATCACTATGTCGCATATGTCTCGAGACTGGAGGGGAAGATTTAATTGCTCCCTGCCATTGCAAAGGCACCCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGACTCTTCATTTTTTGCTATATTGGTGTACAAATTCTACTGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCCGTTTTAGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCATAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGAATGCCATAAAAACACCCCCGAGCCTCGACGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG | 744 | 41.4 | MQLVSHGSHGEDSSESEPILRQSEQISLESASSSEITSVVEDVNGDDLQNQEIEETSHLVNVDQSLCRICLETGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLTLHFLLYWCTNSTGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKNAIKTPPSLDASHIMELKMLGLY | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 54478056 | 54480659 | - | Bda033648 | Bda05g00634 | 6946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g00634 | 247 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Bda05g00634 | 247 | SUPERFAMILY | RING/U-box | 61 | 118 | - | - | |
Bda05g00634 | 247 | CDD | RING_CH-C4HC3_MARCH | 67 | 115 | - | - | |
Bda05g00634 | 247 | SMART | ringv_2 | 66 | 115 | IPR011016 | GO:0008270 | |
Bda05g00634 | 247 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 59 | 121 | IPR011016 | GO:0008270 | |
Bda05g00634 | 247 | PANTHER | OS02G0132300 PROTEIN | 2 | 246 | - | - | |
Bda05g00634 | 247 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 246 | - | - | |
Bda05g00634 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 119 | IPR013083 | - | |
Bda05g00634 | 247 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Bda05g00634 | 247 | Pfam | RING-variant domain | 67 | 114 | IPR011016 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00071 | Bda-Chr4:1546106 | Bda05g00634 | Bda-Chr5:54478056 | 6.38E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g00634 | - | - | rcu:8259964 | 370.163 |