Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00634 ATGCAATTAGTGTCGCATGGTAGTCATGGTGAAGATTCTTCCGAAAGTGAACCCATCTTGAGACAGTCCGAGCAAATATCATTAGAATCTGCATCTTCCTCTGAGATTACTTCAGTTGTAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGAAGAAACTTCTCATCTGGTGAATGTGGATCAATCACTATGTCGCATATGTCTCGAGACTGGAGGGGAAGATTTAATTGCTCCCTGCCATTGCAAAGGCACCCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGACTCTTCATTTTTTGCTATATTGGTGTACAAATTCTACTGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCCGTTTTAGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCATAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGAATGCCATAAAAACACCCCCGAGCCTCGACGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG 744 41.4 MQLVSHGSHGEDSSESEPILRQSEQISLESASSSEITSVVEDVNGDDLQNQEIEETSHLVNVDQSLCRICLETGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLTLHFLLYWCTNSTGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKNAIKTPPSLDASHIMELKMLGLY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54478056 54480659 - Bda033648 Bda05g00634 6946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00634 247 MobiDBLite consensus disorder prediction 1 35 - -
Bda05g00634 247 SUPERFAMILY RING/U-box 61 118 - -
Bda05g00634 247 CDD RING_CH-C4HC3_MARCH 67 115 - -
Bda05g00634 247 SMART ringv_2 66 115 IPR011016 GO:0008270
Bda05g00634 247 ProSiteProfiles Zinc finger RING-CH-type profile. 59 121 IPR011016 GO:0008270
Bda05g00634 247 PANTHER OS02G0132300 PROTEIN 2 246 - -
Bda05g00634 247 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 246 - -
Bda05g00634 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 119 IPR013083 -
Bda05g00634 247 MobiDBLite consensus disorder prediction 19 35 - -
Bda05g00634 247 Pfam RING-variant domain 67 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00071 Bda-Chr4:1546106 Bda05g00634 Bda-Chr5:54478056 6.38E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00634 - - rcu:8259964 370.163