Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00656 ATGGCGATGCGCGATTTAGTTAGCGGAGGAGCAGCTTGTGCTGTTCCTGGCTCTTCTTCCTCATCGAATCCACTTGGTGCTCTCGCCAACGTTCTTATTGGCTCCTCTTCCAAGACTCAGGAAAGGCTGAAGGAGATTCCTACGTCGACATCCACTAGTTCTGAGAGGCAGTTTTCCGCGGAGCAATTTGAGCTTCCAGGTTCTGAGTTCGATAAGCCATTTCTGCAGCCTCATGCTCAGGCTTCGGACTTCTTTCAAGGATTTCGGTCTTCTGCGGATCCAAGTGGTCTGGCTGATGCGTGGGACGAGATACAGCATCCTCAGCCTCCTCAACCTGGGTTCTCGGAGTTTCATGGAATCTATGATCGGGGATCTGGTTCCCAGCTTCAGCAAACTTTTGATGGTCCACCGCAAAGAGTATTGTCAAATTTTTTGCACTCATTTGTTGGAACTAGTCATGGTGGGATTCCTTTTCGTCCAACTGCGCTTCCGGTATTGGGATTATCTCAAGGTGATAAGCAATGTATTCGTGACCGCAGCAGTATAATGGCCAGACACATTTTTGCAGATAAAAGTGAAGATTTTATTGAATCGCAGGTAAATGCTCTGTTAGCTTCCCTAGATATTGATATTGACGCACAGGCTAAGGGATTTATGCCTGGGAGATTTCGAGAGCTAGAAGACTACTGGAATGAGTCCCAAAGTATAAGGAAGCCAGTTGGTCAGTCGGCAGATGGATGGGTTGCAGAATATGGGCAGCACAGGTTGCAATATGGAGAACCTGAGGCTTGGGCGCACTCGTTTGAACAACAACATGGTGCTGGTGGGTGGGCTTCTGAATTCGAGCAGGAGCAGTTTCAACTTGCATCCATGGGTCAAATGAAAGATGTTAACATTGCAAACTTAGCTGCAATGGAGCAAACTCGGCTACTTGCCAATACATTAGCTCAAAATGAAGACCCTAAATTTCAGAACTCCAAGTTTCTTCAGTTTTTGTCAAAGATGAGTCAAGGTGAGCTTATTATTGATGACAATCAAGTCAAGAAGACTTCATTATCTGCATCAGATAATTGGGCATCTGAGTACCACCAACAGTACAATGGAGGTTCTTCCTGGGCTGATGAATTTGTATCCACTCGATCTAATCAGTGGGTTGATGAGTTTGCTAAAGAGGAGCAGCGTGGTCCAGATGATCAGTGGGTCAATGAGTTCTCTAAGTTGAAAGTTACTGACTGGGCTGAAGAATTTGGACAAAAAGTTGGCGAAGGTGCTTTGGGAGAAAATTCTACCGATAATTGGGCTAATTTATATGATGAGTTTCTAAACGAGGAAGTACCTGCCAAGCTAGATGGATCTAAAGGAATCTATGTTTTTTCTGATATGAATCCTTATGTTGGACACCCTTATCCCTTAAAAGAAGGCCAGGAACTGTTCCGCAAGGGCCTTTTGAGTGAGGCAGTTCTTGCTTTGGAAGCTGAAGTTTTGAAAAACCCTGAAAATGCTGAAGGTTGGAGGCTGCTTGGAGTAACACATGCAGAGAATGATGATGATCAGCAGGCTATTGCAGCCATGATGCGTGCACAGGAGGCTGATCCAACAAATTTAGAGGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAATTAGAACAGGCTGCTGCTTTGAAATATTTATATGGATGGCTGCGTCATCACCCAAAGTTTGGATCTCTGGCCAGTCCTGATCTTGATGCTACTTTTCACTATAATGATGTGGCTAAATTATTTAATGAAGCAGCCAGAATGATGCCGGATGATGCTGATGTACATGTAGTACTTGGCGTCCTTTACAATTTGTCGAGAGAATATGACAAAGCCATCTCGTCTTTCCATACAGCTTTGAAACTAAAGCCACAAGATTACTCTCTTTGGAACAAGTTAGGGGCAACTCAAGCAAACAGCATTCAGAGTTCTGATGCAATATTGGCTTATCAAAAGGCACTAGATTTGAAACCTAATTATGTACGAGCATGGGCTAACATGGGAATCAGCTATGCAAACCAGGGTTTGTATGAGGAATCCATTCGATATTATGTCCGGGCACTATGCATGAACCCCAAGGCTGATAACGCATGGCAATATCTACGACTTTCTTTGAGTTGTGCATCGAGGAACGACATGCTTGAACCCTGCGATTCTCGTAATCTCGATGTTCTTCAAAAGGAGTTTCCCTTGTGA 2217 44.29 MAMRDLVSGGAACAVPGSSSSSNPLGALANVLIGSSSKTQERLKEIPTSTSTSSERQFSAEQFELPGSEFDKPFLQPHAQASDFFQGFRSSADPSGLADAWDEIQHPQPPQPGFSEFHGIYDRGSGSQLQQTFDGPPQRVLSNFLHSFVGTSHGGIPFRPTALPVLGLSQGDKQCIRDRSSIMARHIFADKSEDFIESQVNALLASLDIDIDAQAKGFMPGRFRELEDYWNESQSIRKPVGQSADGWVAEYGQHRLQYGEPEAWAHSFEQQHGAGGWASEFEQEQFQLASMGQMKDVNIANLAAMEQTRLLANTLAQNEDPKFQNSKFLQFLSKMSQGELIIDDNQVKKTSLSASDNWASEYHQQYNGGSSWADEFVSTRSNQWVDEFAKEEQRGPDDQWVNEFSKLKVTDWAEEFGQKVGEGALGENSTDNWANLYDEFLNEEVPAKLDGSKGIYVFSDMNPYVGHPYPLKEGQELFRKGLLSEAVLALEAEVLKNPENAEGWRLLGVTHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQAAALKYLYGWLRHHPKFGSLASPDLDATFHYNDVAKLFNEAARMMPDDADVHVVLGVLYNLSREYDKAISSFHTALKLKPQDYSLWNKLGATQANSIQSSDAILAYQKALDLKPNYVRAWANMGISYANQGLYEESIRYYVRALCMNPKADNAWQYLRLSLSCASRNDMLEPCDSRNLDVLQKEFPL 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54765224 54773094 - Bda021782.1 Bda05g00656 6968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00656 738 Pfam Tetratricopeptide repeat 471 533 - -
Bda05g00656 738 Gene3D Tetratricopeptide repeat domain 451 738 IPR011990 GO:0005515
Bda05g00656 738 PANTHER BNAC09G53570D PROTEIN 1 738 - -
Bda05g00656 738 Pfam Tetratricopeptide repeat 600 633 IPR019734 GO:0005515
Bda05g00656 738 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Bda05g00656 738 ProSiteProfiles TPR repeat profile. 668 701 IPR019734 GO:0005515
Bda05g00656 738 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Bda05g00656 738 SMART tpr_5 600 633 IPR019734 GO:0005515
Bda05g00656 738 SMART tpr_5 501 534 IPR019734 GO:0005515
Bda05g00656 738 SMART tpr_5 668 701 IPR019734 GO:0005515
Bda05g00656 738 SMART tpr_5 634 667 IPR019734 GO:0005515
Bda05g00656 738 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 738 IPR024111 -
Bda05g00656 738 MobiDBLite consensus disorder prediction 1 23 - -
Bda05g00656 738 ProSiteProfiles TPR repeat profile. 634 667 IPR019734 GO:0005515
Bda05g00656 738 ProSiteProfiles TPR repeat region circular profile. 668 700 - -
Bda05g00656 738 MobiDBLite consensus disorder prediction 38 59 - -
Bda05g00656 738 SUPERFAMILY TPR-like 454 738 IPR011990 GO:0005515
Bda05g00656 738 MobiDBLite consensus disorder prediction 96 133 - -
Bda05g00656 738 Pfam Tetratricopeptide repeat 669 700 IPR001440 GO:0005515
Bda05g00656 738 ProSiteProfiles TPR repeat region circular profile. 600 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00656 K13342 PEX5, PXR1; peroxin-5 - zju:107417371 1135.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00656 Bda12g00995 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00656 Bda-Chr5:54765224 Bda12g00997 Bda-Chr12:41313847 0 dispersed
Bda11g00844 Bda-Chr11:8321765 Bda05g00656 Bda-Chr5:54765224 2.66E-06 transposed
Bda12g00995 Bda-Chr12:41262084 Bda05g00656 Bda-Chr5:54765224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00656 Bda_Chr05 FPKM 1.490057 1.251754 7.42524 7.021698 0.0 0.0 0.606757 0.458804 0.502772