Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00660 ATGGCGATGTTGCTGAGGAAAATGTGGGAATCGGTGTCCAGCCGTTCGGATACGAATTCCGCGATGTCATCATCCGATAGTCGGCCGTCGGCAGAGTCGTCTTTGGGAGAATTCGATCGTGTTCCCACCGATGTTCTAATGAAGATACTGCGCTTGATTGGGCCAAAGGATGCGGCCAAAATGAGTTTGCTATCCACCTCTTGGAAGTCTCTGGTTTCCGATGATCGCCTTTGGATTTTCTTCCTTCAGACTCAGCAAGAGTATTGGGACTCAATTTACTTCGGGGAAACCACTTTAGCATGGGGTTATCCTCTTCAAACATACTCCAATCAGACCCAACAATTGTCATTCATGCGAATTTATGGAAAACGGGCACAAGTACCAGGTTCTGTTATTATTGATGGTGGCTCTGGCTATTGCAAATTTGGTTGGAGCCAATATGCTTGTCCGTCTGGGCGATCTGCAACCTTTTTGGAATTTGGTAACATCGAGTCGCCTATGTACTCTAGGCTTCGACATTTTTTCACGACTATTTACGGCAGGATGCGGGTCAAACCATCATTGCACCCAGTAGTTGTATCAATACCGATCTGTCATTATGATGATACTGAATCAGCCGTAGCATCTAGGAGGCAGCTCAAAGAAGCCATTCACACTGTCCTTTTTGACATGAATGTTCCCGCTGTTTGTGCTGTTAATCAGGCAGTTTTAGCCCTATATGCTGCAAGAAGAACATCGGGAATTGTAATTAATATTGGATTCCAAGTTACATCTGTTGTTCCTATTTTTCATGGTAAAGTGATGCGCAAGGTTGGGGTTGAAGTTGTGGGTCTGGGAGCATTAAAAATTACTGGATTCCTTAGGGAGCTGATGCAACAAAACAATATATACTTTGAATCAATGTACACAGTTCGTGCACTTAAAGAGAACCTTTGTTATGTTGCTCTTGATTATGAAGCTGAGTTATTGAAAGATACACAAAGATCATATGAAGCTGCCGGAGAAGGCTGGTTCACTCTGTCAAAAGAGCGATTTCAAGCTGGAGAGATTCTTTTCCAGCCACGAATGGCAGGACTCCGTGCAATGGGCTTGCACCAAGCTGTAGCTCTCTGTATAGACCATTGTTATGAAGCTGAATTAGCAGGCGATGAGTCTTGGTTCAAGACGGTAGTTTTATCTGGTGGAAGTGCTTGCTTGCCTGGTCTTGCAGAGAGGTTACAGAAGGAACTTTGCGAATTTCTTCCTCCAGCTGTTAGCAATGATATAAGAGTCATTCCTCCTCCATACGGTGCAGAATCTGCATGGTTTGGCGGGAAACTCATAAGCAATCTAAGCGTCTTTCCTGGTCCCTGGTGTACAACGAAAAAGCAATTCCGGCAGCAATCACGACAAAACTTTGTACAGTGA 1407 44.42 MAMLLRKMWESVSSRSDTNSAMSSSDSRPSAESSLGEFDRVPTDVLMKILRLIGPKDAAKMSLLSTSWKSLVSDDRLWIFFLQTQQEYWDSIYFGETTLAWGYPLQTYSNQTQQLSFMRIYGKRAQVPGSVIIDGGSGYCKFGWSQYACPSGRSATFLEFGNIESPMYSRLRHFFTTIYGRMRVKPSLHPVVVSIPICHYDDTESAVASRRQLKEAIHTVLFDMNVPAVCAVNQAVLALYAARRTSGIVINIGFQVTSVVPIFHGKVMRKVGVEVVGLGALKITGFLRELMQQNNIYFESMYTVRALKENLCYVALDYEAELLKDTQRSYEAAGEGWFTLSKERFQAGEILFQPRMAGLRAMGLHQAVALCIDHCYEAELAGDESWFKTVVLSGGSACLPGLAERLQKELCEFLPPAVSNDIRVIPPPYGAESAWFGGKLISNLSVFPGPWCTTKKQFRQQSRQNFVQ 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54948986 54953388 - Bda021793.1 Bda05g00660 6972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00660 468 Pfam Actin 181 457 IPR004000 -
Bda05g00660 468 MobiDBLite consensus disorder prediction 16 32 - -
Bda05g00660 468 PANTHER ACTIN-RELATED PROTEIN 8 89 465 - -
Bda05g00660 468 SUPERFAMILY Actin-like ATPase domain 130 250 IPR043129 -
Bda05g00660 468 Pfam F-box domain 38 79 IPR001810 GO:0005515
Bda05g00660 468 Gene3D - 36 125 - -
Bda05g00660 468 SUPERFAMILY F-box domain 26 104 IPR036047 GO:0005515
Bda05g00660 468 Gene3D - 174 460 - -
Bda05g00660 468 PANTHER ACTIN 89 465 IPR004000 -
Bda05g00660 468 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Bda05g00660 468 SMART fbox_2 41 81 IPR001810 GO:0005515
Bda05g00660 468 CDD NBD_sugar-kinase_HSP70_actin 131 275 - -
Bda05g00660 468 SMART actin_3 128 458 IPR004000 -
Bda05g00660 468 Gene3D - 235 433 - -
Bda05g00660 468 SUPERFAMILY Actin-like ATPase domain 244 455 IPR043129 -
Bda05g00660 468 Gene3D Actin; Chain A, domain 4 278 361 - -
Bda05g00660 468 MobiDBLite consensus disorder prediction 16 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00660 K16616 PARP8; actin-related protein 8, plant - csv:101218880 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00660 Bda-Chr5:54948986 Bda04g00339 Bda-Chr4:48461589 4.30E-42 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda05g01088 Bda-Chr5:59231392 2.57E-42 transposed
Bda05g00660 Bda-Chr5:54948986 Bda03g01592 Bda-Chr3:55221205 7.20E-42 transposed
Bda05g00660 Bda-Chr5:54948986 Bda14g00128 Bda-Chr14:873558 8.73E-42 transposed
Bda05g00660 Bda-Chr5:54948986 Bda15g00349 Bda-Chr15:6357586 8.73E-42 transposed
Bda05g00660 Bda-Chr5:54948986 Bda15g00357 Bda-Chr15:6440329 8.73E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00660 Bda_Chr05 FPKM 118.346062 127.86422 22.794088 23.342587 21.812897 17.784185 19.572105 25.866011 27.062286