Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00666 CTTTTGTGCAGTGTCGACATAGGTGGGCGGGTTTATGTATGGAAGATTTCTGAGGGCCCAGATGAAGAAGGCAAGCAACAAATCACAGGAAAAGTTGTTATCGCCATTCATATTGAACGAGAGGAGGACGTTGTTCATCCACGAATTTTTTTGGTTGTTGGCTATGGGAAGTCTGTTTTGAGGATTGATACAACTAAAGTTGGAAAGGGTGAACAATTTACTGCTGAAGTTCCACTTAAAGTTTCTCTCGACAAGTTAATAGATGGAGTGCAGCTTGTTGGTAAACATGATAAGGAAGTGACGGAGTTGTCCATGTGCCAGTGGATGACTTCCCGTTTAGTTTCCGCTTCTATGGATGGAACGATTAAGATTTGGGATGATCGCAAAGTTTCACCACTTGTGGTATTGAAACCACACGAAGGTCAACCTGTTAATGCAGCTATCTTTTTAACTGCTCCACATCGACCAGATCACATTATTCTTATAACAGCGGGCCCTCTCAACCGAGAAGTGAAGGTTTGGTGTTCTGCGAGTGAGGAGGGGTGGCTCCTGCCTAGTGATGTTGATTCTTGGAAATGTACCCAGACACTGGAATTGAAGAGTTCAGCTGAACATCAAGTTGAAGAGGCATTTTTCAATCAAGTTGTTGCATTGTCTCAGGCAGGTCTTCTTTTGGTCGCTAATGCAAAGAAAAATGCTATATATGCTGTACACATAGATTATGGCTCTAATCCTGCCACAACGCGCATGGATTACATAGCAGAGTTTACTGTCACTATGCCAATTTTGAGTTTTACTGGAACCAGTGAAATATTAGATCGTAGTACACAGATTGTTCAGGTTTATTGTGTCCAAACTCAAGCCATTCAGCAGTATGCTTTGGATTTATCCCAGTGCTTGCCTCCACCTTTGGAGAATGTCATAGCAGAGAGAACAGAGTCAAATGTTTCTAACGATGCAACTAATGTTGATGGACTTGGATTGAGTTCACCTGTAAGTAAACCAAATGAGTTTCTATTAACTGGTTCTGCAACCAAATCAGCTACATTATTAAATGACCCTGAGGGTGTTTCTGCGGAAAGATATCCCATATCCTCCATTCCTCTTGAGGTGACTTCCAGTGTGAACAAAGATCCTAAACCTGTTTTACTGACATCAGCATCTAGTAATTCTGATATTGTATGTGTCCCATCACCTCCTCTACCAATGAGTCCAAGGTTATCTAGGAATTTGTCTGGTTTTAGAAGTCCAGCAACTAGCTTTGAGTCTATTACTCAATTTAGCGACCATGGTAGTGACCAGCGAGTTAATGATTATCCAATTGACAGACAAATGGATGCCATTCATGCAAATGTATCTGATGGGCCGACCTTCGGTGATGATTTGAGGAATATCGATGAGAAAATTGCTCAAGAAGATCTGTCTGGTGTAGTCAGTCCTCCTATGATGTTTAGACATCCAACTCATTTGATTACTCCCTCTGAGATACTTATGGGTGCTTCTTCATCTGATGCGGCTACTATTGTCGAAGATAAGACTGAAGGAAACTCAACTATTCAGGATGTGGTTGTCAATAATGATATGAGTGGGGCTGAGTTAGAGGTTAAAGAGGTGGGTGAGATGAGGTCCACTGAAAGTAGTGAATATGACTCTTGGGGTGAACCTCGTAACGCATCGGCAGAAACTAAGGAGAAATTGTTCTGCTCCCAGGCTTCAGATCTTGGTATTGAGGTGGCCAGAGACTGTTGTGCAATATCATCTGAAACTTACATAACGGATGAAGCTCAACAAGTTGTTTCTATGGACTCATTGATTGTACCTACTCATGGTAGTGAAGAAGACCAAGCCTCTACAAGAGATGTGTGTGAAAAAGTTTCGGATTCATCTGCATCCACAATAATTCCACAGATGGTCTCACCAAGTACAAAGGGTAAAAAACATAAGGGTAAAAATTCTCAAACGTCTGGTCTGTCTTCTCCATCTCCAAGTGCTTTGAACTCAATCAATCTATCCAATGAACCTTGTTCAAGTTTTCCTTCTGTTGAAAGTGTGTATCCTCAAATGTTGGCAATCCAAGATACACTGAATCAGCTTATGGCAACACAAAAAGAGTTGCAGAAGCAGATGCAGATGATAGTGGCTGTTCCAGTTACGAAGGAAGGTAAGAGACTGGAGACAGCTTTTGGGCGGAGCATGGAGAAGACTTTGAAGGCCCATAATGATGCTTTATGGGCTCGATTTCAGGAAGAAAATGCAAAAAATGACAAGTCTCTGCGGGATTGTACGCAAAAGATAACAACTGTGGTAAATAATTTTATGAACAAGGACTTGCCCACATTGTTAGAAAAGGCAGTGAAGAAAGAAATGGCTGCTATTGGACCAGCTTTGGTTCGGACAATCACCCCAGTTATAGAGAAAACAATATCTTCATCCATTATTGATTCTTTCCAGCAGAGAGGTGTCGGTGATAAGGCAGTGAATCAACTGGAAAAATCTGTTAATACGAAACTTGAAGCTACTGTTGCAAGGCAAATTCAAGCACAGTTTCAAACTTCTGGCAAGCAAGCTCTGCAGGAAGCTTTGAAATTAAATTTGGAAGCTTCAGTGATTCCTGCTTTCGAGATGTCATGCAAATCAATGTTTGAGCAAATCGATACTACCTTTCAGAAAGGAATGGGTGAGCATACTGCTGCCGTTCTGCAGCACGTTGAGTCTGCCCATTCTCCATTGGCAACGGCATTAAGGGATGCTATTAATTCTGTATCAACAGTAAGTCAGTCTTTGAGTGGAGAATTGGCTGATGGTCAACGAAAACTGATAGCTCTAGCAACCGCAGGTGCAAATATCAGTTCAATGAATCCATTGGTTTCTCAACTGAGCAATGGGCCTCTTGGTGTCCATGAGAAGGTTGAGGTTCCTTTGGATCCAACGAAAGAGATCTCTAGGCTTGTGTCTGAACGAAAATATGAAGAAGCCTTCACTGCAGCTTTACAAAGAAGTGATGTGTCAATTGTATCTTGGTTATGTGCTCAGGTTGATCTTCGGGGAATTTTGACAATGGTGCCCGTCCCATTGAGTCAAGGAGTACTGCTCTCGCTTCTGCAACAATTGGCGTGTGACATCAACAAGGATAGAGGTCAAAAAGTATCTTGGATGACTGATGTGGCAGCTGCCATAAACACAGGGGATCCGATGATTGCAGTGCACGTCCGTCCGATCTTTGATCAAGTGTATCAGATACTGAGCCATCAACGGAACATTGGTGGAATTCCTCCGGGGGAGATGTCGAGCATTCGCGTTCTGATGCACGTGATCAACTCCATCCTGGTGACGTGTAAA 3339 42.44 LLCSVDIGGRVYVWKISEGPDEEGKQQITGKVVIAIHIEREEDVVHPRIFLVVGYGKSVLRIDTTKVGKGEQFTAEVPLKVSLDKLIDGVQLVGKHDKEVTELSMCQWMTSRLVSASMDGTIKIWDDRKVSPLVVLKPHEGQPVNAAIFLTAPHRPDHIILITAGPLNREVKVWCSASEEGWLLPSDVDSWKCTQTLELKSSAEHQVEEAFFNQVVALSQAGLLLVANAKKNAIYAVHIDYGSNPATTRMDYIAEFTVTMPILSFTGTSEILDRSTQIVQVYCVQTQAIQQYALDLSQCLPPPLENVIAERTESNVSNDATNVDGLGLSSPVSKPNEFLLTGSATKSATLLNDPEGVSAERYPISSIPLEVTSSVNKDPKPVLLTSASSNSDIVCVPSPPLPMSPRLSRNLSGFRSPATSFESITQFSDHGSDQRVNDYPIDRQMDAIHANVSDGPTFGDDLRNIDEKIAQEDLSGVVSPPMMFRHPTHLITPSEILMGASSSDAATIVEDKTEGNSTIQDVVVNNDMSGAELEVKEVGEMRSTESSEYDSWGEPRNASAETKEKLFCSQASDLGIEVARDCCAISSETYITDEAQQVVSMDSLIVPTHGSEEDQASTRDVCEKVSDSSASTIIPQMVSPSTKGKKHKGKNSQTSGLSSPSPSALNSINLSNEPCSSFPSVESVYPQMLAIQDTLNQLMATQKELQKQMQMIVAVPVTKEGKRLETAFGRSMEKTLKAHNDALWARFQEENAKNDKSLRDCTQKITTVVNNFMNKDLPTLLEKAVKKEMAAIGPALVRTITPVIEKTISSSIIDSFQQRGVGDKAVNQLEKSVNTKLEATVARQIQAQFQTSGKQALQEALKLNLEASVIPAFEMSCKSMFEQIDTTFQKGMGEHTAAVLQHVESAHSPLATALRDAINSVSTVSQSLSGELADGQRKLIALATAGANISSMNPLVSQLSNGPLGVHEKVEVPLDPTKEISRLVSERKYEEAFTAALQRSDVSIVSWLCAQVDLRGILTMVPVPLSQGVLLSLLQQLACDINKDRGQKVSWMTDVAAAINTGDPMIAVHVRPIFDQVYQILSHQRNIGGIPPGEMSSIRVLMHVINSILVTCK 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54972814 54980566 - Bda033651 Bda05g00666 6978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00666 1113 Gene3D - 1025 1112 IPR044938 -
Bda05g00666 1113 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 126 IPR001680 GO:0005515
Bda05g00666 1113 Coils Coil 688 711 - -
Bda05g00666 1113 SUPERFAMILY WD40 repeat-like 2 226 IPR036322 GO:0005515
Bda05g00666 1113 MobiDBLite consensus disorder prediction 609 670 - -
Bda05g00666 1113 MobiDBLite consensus disorder prediction 651 670 - -
Bda05g00666 1113 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 126 - -
Bda05g00666 1113 Gene3D - 1 294 IPR015943 GO:0005515
Bda05g00666 1113 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 1 1113 - -
Bda05g00666 1113 MobiDBLite consensus disorder prediction 622 639 - -
Bda05g00666 1113 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 80 240 IPR032401 -
Bda05g00666 1113 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 1 1113 IPR045152 GO:0031087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00666 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 1516.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00985 Bda-Chr12:41175916 Bda05g00666 Bda-Chr5:54972814 8.24E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00666 Bda_Chr05 FPKM 50.631805 54.399731 0.0 0.0 4.973717 4.782406 5.334295 0.0 0.0