Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00681 ATGCCCATCGCAAACGTCATACGCATTATGCGCCGGATCCTGCCCTCGCACGCCAAGATTTCAGACGACGCCAAAGAGACGATCCAAGAGTGCGTGTCGGAGTACATAAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGCGAGAGCAGAGAAAGACTGTGACGGCGGAGGACGTGCTCTGGGCTATGGGGAAGTTGGGGTTCGACGACTACGTGGAGCCGCTCACCGTTTACCTGAGCAGATACAGGGAGACGGAGAACGAAAGGACTCGGGTGGAGCCGCTTTTGAGGCGTGGGTCCGGGGATTATGGGCCTCCGGTTGGGGTTGTTAGTGGGTACGGGCCGGGTTATCAAGTTGGGTATTTTGATCCCATGGGTGGGTATTATGGTGGGCCAAGTGGTGGGTCTTCTTCTGCTGCAGGTGGATTTGACCCGTTTCCTCCCTTTAAATGA 456 57.02 MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYVEPLTVYLSRYRETENERTRVEPLLRRGSGDYGPPVGVVSGYGPGYQVGYFDPMGGYYGGPSGGSSSAAGGFDPFPPFK 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55134536 55134991 - Bda021816.1 Bda05g00681 6993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00681 151 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bda05g00681 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Bda05g00681 151 ProSitePatterns NF-YB/HAP3 subunit signature. 31 47 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda05g00681 151 SUPERFAMILY Histone-fold 1 93 IPR009072 GO:0046982
Bda05g00681 151 Gene3D Histone, subunit A 1 101 IPR009072 GO:0046982
Bda05g00681 151 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Bda05g00681 151 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Bda05g00681 151 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Bda05g00681 151 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 1 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00681 Bda-Chr5:55134536 Bda13g00590 Bda-Chr13:6927795 3.14E-45 dispersed
Bda05g00681 Bda-Chr5:55134536 Bda06g00410 Bda-Chr6:6267634 7.47E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15899 PF00808 CBFD_NFYB_HMF 2.70E-25 CL0012 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00681 K08065 - csv:116402762 198.749