Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00693 ATGGCATATTCTCAGGATTCATGGATAAAGGGATATAATGAAGCGTTAAAACTTTCTGATTGCATCAATGGAATGGTTTCCGAGCAGGCTTCCCTTCCTGCATCTGGACCAGAAGCTCAGCGTTATGCCTCTGGTGTAAGAAGGAAGATATCAATATTGAGGACAAAAATCGACAGCTTAGAGTCCCTTCTGGGAAAGCTGCCTGGAAAGCAACCTCTTTCAGAAAAGGAAATGAATCGACGCAAAGACTCACTCTTGAATTTGGGAACAAAAGTGAAACAGATGACTTCAACGTTAAACACGATGAATTTTGCCAACCGTGACAGCTTGCTTGGCCAAGAGATGAAGGAAGCCAATGCAACAAACAAGATAGTAGGATTGGACAACCCAGGGCTTATTGGCCTTCAGCGACAAATTATGAAGGCAGAGCAAGATGAAGGCCTTGAGAAGCTCCAGGAGACTGTAATCAGTACAAAACATATTGCATTGGCAGTAAATGAAGAACTCGACTTACATTCTAGGCTAATTGATGATTTGGATCAACATGTGGATGCCACTGATTCCAGACTAATGTTGGCGCAAAAGAAGCTGGCAATTTTGAATAAGCGCATAAAAACAGGCTGCTTGTGCAAGTGCATGCTATTATCCATCGTCGGGATTATCGCTTTGGTGGTTGCCATGTGGTTACTCATCAAATACATGTAA 705 42.55 MAYSQDSWIKGYNEALKLSDCINGMVSEQASLPASGPEAQRYASGVRRKISILRTKIDSLESLLGKLPGKQPLSEKEMNRRKDSLLNLGTKVKQMTSTLNTMNFANRDSLLGQEMKEANATNKIVGLDNPGLIGLQRQIMKAEQDEGLEKLQETVISTKHIALAVNEELDLHSRLIDDLDQHVDATDSRLMLAQKKLAILNKRIKTGCLCKCMLLSIVGIIALVVAMWLLIKYM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55214811 55216467 + Bda021828.1 Bda05g00693 7005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00693 234 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 4 228 - -
Bda05g00693 234 SMART tSNARE_6 133 200 IPR000727 -
Bda05g00693 234 Gene3D - 142 202 - -
Bda05g00693 234 SUPERFAMILY SNARE fusion complex 134 199 - -
Bda05g00693 234 CDD SNARE_Qc 141 198 - -
Bda05g00693 234 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 138 200 IPR000727 -
Bda05g00693 234 PANTHER SYNTAXIN 4 228 IPR045242 -
Bda05g00693 234 Pfam SNARE domain 175 225 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda05g00693 Bda09g00411 CCT
Bda05g00693 Bda07g00381 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00693 Bda-Chr5:55214811 Bda07g00381 Bda-Chr7:4808229 2.34E-98 dispersed
Bda05g00693 Bda-Chr5:55214811 Bda09g00411 Bda-Chr9:5111043 6.44E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00693 K08503 - cit:102608030 339.732